Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm28569-201ENSMUST00000188748 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28120-201ENSMUST00000188812 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28369-201ENSMUST00000188993 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm29037-201ENSMUST00000189092 313 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28909-201ENSMUST00000189406 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28705-201ENSMUST00000189548 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28861-201ENSMUST00000189681 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm29180-201ENSMUST00000190003 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28939-201ENSMUST00000190351 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm28223-201ENSMUST00000190469 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm29575-201ENSMUST00000190597 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm29092-201ENSMUST00000190768 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm29469-201ENSMUST00000191448 315 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm36891-201ENSMUST00000191995 655 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Trav5d-2-201ENSMUST00000196107 275 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Trav5n-2-201ENSMUST00000197136 275 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 4930431L21Rik-202ENSMUST00000200253 624 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm44881-201ENSMUST00000205425 367 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm45013-201ENSMUST00000206883 178 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Gm43663-201ENSMUST00000198643 1505 ntBASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 A230004M16Rik-202ENSMUST00000139508 4468 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
Ddb1Q3U1J4 Olfr1109-202ENSMUST00000214636 2483 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Tbx22-201ENSMUST00000068451 2947 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm24729-201ENSMUST00000158225 137 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm26024-201ENSMUST00000158657 322 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm21893-201ENSMUST00000179119 397 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Mir7009-201ENSMUST00000184519 64 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm36831-201ENSMUST00000196485 631 ntTSL 2 BASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Igkv4-65-201ENSMUST00000196986 358 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm44519-201ENSMUST00000206486 122 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm45395-201ENSMUST00000209891 559 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm35732-201ENSMUST00000221737 356 ntTSL 3 BASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 1700019M22Rik-201ENSMUST00000073560 354 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm26494-201ENSMUST00000083154 143 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm24493-201ENSMUST00000083805 143 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Olfr218-202ENSMUST00000215844 3410 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Gm36989-201ENSMUST00000193225 2160 ntBASIC3.68□□□□□ -1.82
Ddb1Q3U1J4 Rps27-ps1-201ENSMUST00000118179 246 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm13200-201ENSMUST00000138802 258 ntTSL 3 BASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm23325-201ENSMUST00000157422 129 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm22099-201ENSMUST00000157925 123 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm23196-201ENSMUST00000158806 107 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm16289-201ENSMUST00000162079 183 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm37428-201ENSMUST00000193886 137 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm7871-201ENSMUST00000195346 618 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Olfr1304-ps1-201ENSMUST00000208032 189 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Olfr1202-203ENSMUST00000217059 1153 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 AC130829.3-201ENSMUST00000222735 154 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 AC154271.1-201ENSMUST00000224780 383 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm45557-201ENSMUST00000210004 1651 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Olfr1325-202ENSMUST00000216007 3617 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Olfr847-202ENSMUST00000216839 2385 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Gm45039-201ENSMUST00000209181 3477 ntBASIC3.67□□□□□ -1.82
Ddb1Q3U1J4 Neb-203ENSMUST00000075301 21456 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Olfr1354-203ENSMUST00000217073 3792 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Trbv17-201ENSMUST00000103275 374 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm13439-201ENSMUST00000117541 409 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm13424-201ENSMUST00000122301 354 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm25054-201ENSMUST00000157370 97 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm24075-201ENSMUST00000158175 72 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Scgb2b23-ps-202ENSMUST00000167012 516 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm26585-201ENSMUST00000180890 630 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm27402-201ENSMUST00000183890 120 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm43739-201ENSMUST00000198294 307 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm44072-201ENSMUST00000203666 383 ntTSL 3 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm9967-203ENSMUST00000206903 408 ntTSL 3 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm45207-201ENSMUST00000207469 145 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm18015-201ENSMUST00000214879 316 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 AC154576.2-202ENSMUST00000223916 688 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Sprr4-201ENSMUST00000062129 231 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 AF357341-201ENSMUST00000083088 75 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm5596-201ENSMUST00000207988 2421 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm42684-201ENSMUST00000197663 3615 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Gm9218-201ENSMUST00000121068 2694 ntBASIC3.66□□□□□ -1.82
Ddb1Q3U1J4 Olfr1033-205ENSMUST00000218397 3973 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
Ddb1Q3U1J4 Gm44150-201ENSMUST00000203317 2619 ntBASIC3.65□□□□□ -1.82
Ddb1Q3U1J4 Catsper4-202ENSMUST00000105878 632 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Rpl23a-ps6-201ENSMUST00000119466 468 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm25866-201ENSMUST00000158245 112 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm9830-201ENSMUST00000178509 357 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm22448-201ENSMUST00000179254 107 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm25121-201ENSMUST00000179846 79 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Mir7242-201ENSMUST00000183710 79 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Olfr468-ps1-201ENSMUST00000207203 593 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 AC126267.1-201ENSMUST00000214282 284 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 CT009718.1-201ENSMUST00000220784 395 ntTSL 2 BASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 AC154552.1-201ENSMUST00000222969 202 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm26447-201ENSMUST00000082448 129 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm26166-201ENSMUST00000083788 107 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm24698-201ENSMUST00000083883 130 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm10337-201ENSMUST00000096145 165 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm20345-201ENSMUST00000175839 2414 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Gm43256-201ENSMUST00000199995 3091 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 A930027P06Rik-201ENSMUST00000221298 2975 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 A630081D01Rik-201ENSMUST00000195842 1833 ntBASIC3.65□□□□□ -1.83
Ddb1Q3U1J4 Vmn1r219-204ENSMUST00000228113 5639 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
Ddb1Q3U1J4 Gm23142-201ENSMUST00000101848 105 ntBASIC3.64□□□□□ -1.83
Ddb1Q3U1J4 Gm26240-201ENSMUST00000101893 105 ntBASIC3.64□□□□□ -1.83
Ddb1Q3U1J4 Gm11065-201ENSMUST00000111462 228 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 76,532 protein–RNA pairs in 141.7 ms