Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Vmn2r23-201ENSMUST00000172391 2602 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
ShhQ62226 Olfr862-202ENSMUST00000079660 2604 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
ShhQ62226 Vmn2r37-201ENSMUST00000072787 3081 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
ShhQ62226 Gm42448-201ENSMUST00000197122 2644 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Zfp709-201ENSMUST00000034259 2181 ntTSL 5 BASIC2.91□□□□□ -1.94
ShhQ62226 Lrrc19-202ENSMUST00000107101 2820 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
ShhQ62226 Mir344c-201ENSMUST00000103919 92 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm26423-201ENSMUST00000104277 128 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Mir291a-201ENSMUST00000104815 82 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm13355-201ENSMUST00000117996 317 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm14877-201ENSMUST00000119803 478 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm15327-202ENSMUST00000153958 467 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
ShhQ62226 Gm23852-201ENSMUST00000158376 77 ntBASIC2.91□□□□□ -1.94
ShhQ62226 H3f3aos-202ENSMUST00000159740 229 ntTSL 5 BASIC2.91□□□□□ -1.94
ShhQ62226 Gm17065-201ENSMUST00000165245 239 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm5967-201ENSMUST00000172723 494 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm18520-201ENSMUST00000174783 658 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Mir5136-201ENSMUST00000175573 76 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm22308-201ENSMUST00000177609 107 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm23977-201ENSMUST00000177871 74 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm23963-201ENSMUST00000179603 77 ntBASIC2.91□□□□□ -1.94
ShhQ62226 1700029M03Rik-201ENSMUST00000187300 444 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
ShhQ62226 Gm38238-201ENSMUST00000194334 346 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm37361-201ENSMUST00000194345 132 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Mir7116-201ENSMUST00000195956 70 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm28563-201ENSMUST00000201179 211 ntTSL 3 BASIC2.91□□□□□ -1.94
ShhQ62226 Gm44073-201ENSMUST00000204173 429 ntTSL 3 BASIC2.91□□□□□ -1.94
ShhQ62226 AC123803.1-201ENSMUST00000216093 189 ntBASIC2.91□□□□□ -1.94
ShhQ62226 AC134596.2-201ENSMUST00000222158 171 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm22997-201ENSMUST00000082845 107 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm25141-201ENSMUST00000083177 107 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm25793-201ENSMUST00000083287 107 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Gm23136-201ENSMUST00000083425 99 ntBASIC2.91□□□□□ -1.94
ShhQ62226 Zfp711-201ENSMUST00000071814 3817 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
ShhQ62226 Ccdc178-202ENSMUST00000115837 2979 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
ShhQ62226 Olfr1258-201ENSMUST00000102609 7007 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.94
ShhQ62226 Gm42536-201ENSMUST00000197562 1613 ntBASIC2.9□□□□□ -1.94
ShhQ62226 Gm9696-201ENSMUST00000094227 3050 ntTSL 2 BASIC2.9□□□□□ -1.94
ShhQ62226 Gm14387-201ENSMUST00000121827 2055 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm23142-201ENSMUST00000101848 105 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm26240-201ENSMUST00000101893 105 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Vma21-ps-201ENSMUST00000114578 306 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
ShhQ62226 Defb44-ps-201ENSMUST00000126871 219 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm23713-201ENSMUST00000157353 70 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm22615-201ENSMUST00000158102 70 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm22675-201ENSMUST00000158430 104 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm23581-201ENSMUST00000158531 63 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Vmn2r-ps65-201ENSMUST00000173309 220 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Mir3470b-201ENSMUST00000175563 126 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm29665-201ENSMUST00000191457 528 ntBASIC2.9□□□□□ -1.95
ShhQ62226 AC133156.1-202ENSMUST00000227284 363 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Gm26329-201ENSMUST00000093723 110 ntBASIC2.9□□□□□ -1.95
ShhQ62226 Olfr924-202ENSMUST00000217350 3431 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
ShhQ62226 Olfr1105-202ENSMUST00000215978 3012 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
ShhQ62226 Olfr1496-202ENSMUST00000209137 2394 ntAPPRIS ALT1 TSL 5 BASIC2.9□□□□□ -1.95
ShhQ62226 Zfp280c-203ENSMUST00000088898 4024 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
ShhQ62226 Cp-202ENSMUST00000091309 4029 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
ShhQ62226 Olfr592-203ENSMUST00000218618 5978 ntTSL 5 BASIC2.89□□□□□ -1.95
ShhQ62226 Cdk13-205ENSMUST00000222800 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
ShhQ62226 Gm24338-201ENSMUST00000104205 127 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm11253-201ENSMUST00000118486 201 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm25270-201ENSMUST00000122606 138 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm25392-201ENSMUST00000157335 297 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm22654-201ENSMUST00000157874 105 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm22113-201ENSMUST00000158343 104 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm25707-201ENSMUST00000175120 96 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm6660-201ENSMUST00000179149 468 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm7258-201ENSMUST00000179317 300 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm28002-201ENSMUST00000184832 100 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm27505-201ENSMUST00000185071 110 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm23370-202ENSMUST00000197008 129 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm24350-202ENSMUST00000198309 132 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm43875-201ENSMUST00000203319 2475 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm38997-201ENSMUST00000205669 304 ntTSL 5 BASIC2.89□□□□□ -1.95
ShhQ62226 AC158622.1-201ENSMUST00000217107 230 ntBASIC2.89□□□□□ -1.95
ShhQ62226 AC117226.1-201ENSMUST00000221635 3737 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Dmd-203ENSMUST00000114000 14910 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
ShhQ62226 Tfpi-203ENSMUST00000111711 3968 ntTSL 5 BASIC2.89□□□□□ -1.95
ShhQ62226 Gm18337-201ENSMUST00000219023 5762 ntBASIC2.89□□□□□ -1.95
ShhQ62226 Gm14288-201ENSMUST00000109020 3438 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
ShhQ62226 Vmn1r80-205ENSMUST00000227755 10455 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
ShhQ62226 Olfr309-202ENSMUST00000174158 3293 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
ShhQ62226 Nlrp9a-201ENSMUST00000071780 3125 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
ShhQ62226 Gm13581-201ENSMUST00000120675 278 ntBASIC2.88□□□□□ -1.95
ShhQ62226 n-R5s32-201ENSMUST00000122495 103 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Gm23886-201ENSMUST00000122684 313 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Gm23586-201ENSMUST00000157657 123 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Gm25384-201ENSMUST00000157807 105 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Gm24358-201ENSMUST00000158424 288 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Trav7d-3-201ENSMUST00000179789 402 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
ShhQ62226 Gm10421-202ENSMUST00000186114 132 ntTSL 3 BASIC2.88□□□□□ -1.95
ShhQ62226 Gm20257-202ENSMUST00000188643 130 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Trav5d-2-201ENSMUST00000196107 275 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Igkv9-128-201ENSMUST00000196602 353 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Trav5n-2-201ENSMUST00000197136 275 ntBASIC2.88□□□□□ -1.95
ShhQ62226 1700072O05Rik-201ENSMUST00000204672 321 ntTSL 5 BASIC2.88□□□□□ -1.95
ShhQ62226 Gm45038-201ENSMUST00000207537 3838 ntBASIC2.88□□□□□ -1.95
ShhQ62226 Gm45778-201ENSMUST00000211959 153 ntBASIC2.88□□□□□ -1.95
ShhQ62226 AC124524.1-201ENSMUST00000225833 181 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 76,532 protein–RNA pairs in 97.9 ms