Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm27672-201ENSMUST00000183751 204 ntBASIC4.57□□□□□ -1.68
Rnf40Q3U319 Gm29596-201ENSMUST00000185710 385 ntBASIC4.57□□□□□ -1.68
Rnf40Q3U319 AC121804.2-201ENSMUST00000222531 316 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Olfr1148-202ENSMUST00000215230 3095 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Cp-205ENSMUST00000108329 4564 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Olfr112-204ENSMUST00000208832 3173 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Olfr1135-202ENSMUST00000213835 2648 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Ddx3y-201ENSMUST00000091190 4600 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Btbd35f12-201ENSMUST00000178827 1908 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Atad1-201ENSMUST00000070210 2813 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Olfr298-202ENSMUST00000213223 3273 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm12427-201ENSMUST00000117719 302 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm14871-201ENSMUST00000119056 194 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm14916-201ENSMUST00000121904 204 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 A630023P12Rik-204ENSMUST00000142879 524 ntTSL 3 BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm24747-201ENSMUST00000157835 87 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm17472-201ENSMUST00000167638 352 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm25019-201ENSMUST00000179732 110 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm28828-201ENSMUST00000186601 696 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm567-201ENSMUST00000197127 469 ntTSL 3 BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm11351-202ENSMUST00000225724 478 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm43780-201ENSMUST00000196510 3600 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Zfp595-201ENSMUST00000109735 3896 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
Rnf40Q3U319 AC153150.1-201ENSMUST00000226065 3782 ntBASIC4.56□□□□□ -1.68
Rnf40Q3U319 Igf1-202ENSMUST00000095360 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Rnf40Q3U319 Gm45093-201ENSMUST00000206859 2463 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Sycp2-201ENSMUST00000081134 5717 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Fam46d-204ENSMUST00000167154 3004 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm28154-201ENSMUST00000186267 4218 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Cubn-201ENSMUST00000091436 11262 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Trbv30-201ENSMUST00000103282 332 ntAPPRIS ALT2 BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm23907-201ENSMUST00000104595 189 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm22312-201ENSMUST00000158005 130 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm24358-201ENSMUST00000158424 288 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm26405-201ENSMUST00000158495 100 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Mir1963-201ENSMUST00000158594 59 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm27934-201ENSMUST00000158795 63 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm45031-201ENSMUST00000206800 288 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm45317-201ENSMUST00000210385 223 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 2500002B13Rik-202ENSMUST00000210752 298 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
Rnf40Q3U319 AC164100.1-201ENSMUST00000227214 508 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Mir218-1-201ENSMUST00000083669 110 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm25681-201ENSMUST00000083938 106 ntBASIC4.55□□□□□ -1.68
Rnf40Q3U319 Vmn2r108-201ENSMUST00000167314 2568 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
Rnf40Q3U319 Gm37645-201ENSMUST00000194285 3556 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Olfr728-202ENSMUST00000213685 7087 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Olfr644-203ENSMUST00000213991 3506 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Uty-205ENSMUST00000143286 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm44682-201ENSMUST00000208501 2614 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Fnd3c2-201ENSMUST00000091282 3662 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Vmn2r90-201ENSMUST00000169805 2592 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Vmn2r68-201ENSMUST00000061074 2556 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm15180-201ENSMUST00000117745 492 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm11460-201ENSMUST00000118200 361 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm23589-201ENSMUST00000157660 105 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Mir1951-201ENSMUST00000157981 89 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm23702-201ENSMUST00000158840 130 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Mir7028-201ENSMUST00000185016 64 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm43381-201ENSMUST00000198553 165 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Sorbs2-203ENSMUST00000124544 3798 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm38255-201ENSMUST00000194910 2996 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Vmn1r46-202ENSMUST00000205088 10770 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
Rnf40Q3U319 Gm37498-201ENSMUST00000193524 4002 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 B230334C09Rik-201ENSMUST00000200255 8927 ntBASIC4.54□□□□□ -1.68
Rnf40Q3U319 Olfr1484-202ENSMUST00000208104 3621 ntTSL 2 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Olfr1484-206ENSMUST00000217451 3628 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 AC124346.2-201ENSMUST00000217986 5083 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Ddx60-202ENSMUST00000093485 5989 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Snord14c-201ENSMUST00000101927 86 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm13167-201ENSMUST00000118554 578 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm14491-201ENSMUST00000121919 199 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm25544-201ENSMUST00000122676 120 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm25383-201ENSMUST00000157810 144 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm7592-201ENSMUST00000160674 627 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Mir5103-201ENSMUST00000175111 79 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm27492-201ENSMUST00000185194 187 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm43829-201ENSMUST00000196191 3802 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Igkv4-60-201ENSMUST00000200639 358 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm34648-201ENSMUST00000202460 338 ntTSL 2 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm44294-201ENSMUST00000205090 728 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Olfr1269-203ENSMUST00000216493 3827 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 AC123709.1-201ENSMUST00000224848 345 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm10298-201ENSMUST00000074801 265 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Mir27a-201ENSMUST00000083510 87 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Gm26327-201ENSMUST00000093724 111 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Senp8-201ENSMUST00000051039 3682 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Cp-202ENSMUST00000091309 4029 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Synpr-207ENSMUST00000223583 3362 ntBASIC4.53□□□□□ -1.68
Rnf40Q3U319 Olfr1222-202ENSMUST00000214027 2393 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
Rnf40Q3U319 Erbin-205ENSMUST00000188997 5084 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Olfr1440-208ENSMUST00000217062 7484 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Traj30-201ENSMUST00000103711 59 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm15670-201ENSMUST00000117740 447 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Rps27-ps1-201ENSMUST00000118179 246 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm23327-201ENSMUST00000157420 78 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm23585-201ENSMUST00000157656 102 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm23513-201ENSMUST00000158181 133 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Cox6b2-206ENSMUST00000182738 423 ntTSL 2 BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm27308-201ENSMUST00000184807 233 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm29535-201ENSMUST00000185723 109 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms