| Hoxa11 | P31311 | Gm25064-201 | ENSMUST00000179535 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26295-201 | ENSMUST00000179690 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23712-201 | ENSMUST00000179713 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22823-201 | ENSMUST00000179754 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22360-201 | ENSMUST00000179775 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24978-201 | ENSMUST00000179782 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24967-201 | ENSMUST00000179791 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25173-201 | ENSMUST00000179794 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24870-201 | ENSMUST00000179897 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22288-201 | ENSMUST00000179904 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22645-201 | ENSMUST00000180010 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24565-201 | ENSMUST00000180099 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23805-201 | ENSMUST00000180129 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23512-201 | ENSMUST00000180237 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25327-201 | ENSMUST00000180263 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26058-201 | ENSMUST00000180294 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22418-201 | ENSMUST00000180326 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Mir6346-201 | ENSMUST00000183982 | 81 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Mir195b-201 | ENSMUST00000184814 | 97 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm28755-201 | ENSMUST00000185773 | 199 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm28288-201 | ENSMUST00000191019 | 214 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm43510-201 | ENSMUST00000197922 | 353 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm42578-201 | ENSMUST00000199960 | 194 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm43914-201 | ENSMUST00000203592 | 594 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | AC130821.1-201 | ENSMUST00000221997 | 293 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | CT025538.3-201 | ENSMUST00000225279 | 3848 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | AC125223.1-203 | ENSMUST00000225304 | 498 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23629-201 | ENSMUST00000082465 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23924-201 | ENSMUST00000082474 | 108 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22246-201 | ENSMUST00000082478 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22749-201 | ENSMUST00000082490 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22747-201 | ENSMUST00000082495 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22063-201 | ENSMUST00000082560 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23057-201 | ENSMUST00000082801 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26328-201 | ENSMUST00000082821 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26331-201 | ENSMUST00000082824 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24205-201 | ENSMUST00000082953 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25405-201 | ENSMUST00000082973 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22628-201 | ENSMUST00000082988 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26324-201 | ENSMUST00000083073 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24535-201 | ENSMUST00000083140 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26496-201 | ENSMUST00000083150 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26127-201 | ENSMUST00000083193 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24456-201 | ENSMUST00000083198 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24458-201 | ENSMUST00000083204 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24018-201 | ENSMUST00000083232 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25794-201 | ENSMUST00000083286 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25790-201 | ENSMUST00000083293 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22295-201 | ENSMUST00000083311 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25127-201 | ENSMUST00000083336 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25583-201 | ENSMUST00000083413 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25577-201 | ENSMUST00000083414 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24414-201 | ENSMUST00000083434 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24861-201 | ENSMUST00000083459 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Mir10a-201 | ENSMUST00000083585 | 110 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24803-201 | ENSMUST00000083693 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23103-201 | ENSMUST00000083725 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22580-201 | ENSMUST00000083727 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24260-201 | ENSMUST00000083741 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm23732-201 | ENSMUST00000083751 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22682-201 | ENSMUST00000083854 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm25869-201 | ENSMUST00000083855 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24693-201 | ENSMUST00000083885 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26317-201 | ENSMUST00000083894 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22352-201 | ENSMUST00000083917 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm24448-201 | ENSMUST00000083979 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22798-201 | ENSMUST00000083992 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26427-201 | ENSMUST00000093648 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22886-201 | ENSMUST00000093714 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm22170-201 | ENSMUST00000097247 | 107 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm43889-201 | ENSMUST00000203950 | 3681 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm43663-201 | ENSMUST00000198643 | 1505 nt | BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Hif1a-202 | ENSMUST00000110461 | 4385 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.12 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Ctdspl2-202 | ENSMUST00000110572 | 4160 nt | TSL 5 BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Pak3-203 | ENSMUST00000112864 | 8612 nt | APPRIS P3 TSL 1 (best) BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Mir878-201 | ENSMUST00000104680 | 78 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm26247-201 | ENSMUST00000116702 | 91 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm13876-201 | ENSMUST00000118451 | 261 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm15223-201 | ENSMUST00000120989 | 826 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm3848-202 | ENSMUST00000151564 | 301 nt | TSL 3 BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Rpl26-ps4-201 | ENSMUST00000170279 | 438 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Vmn2r-ps34-201 | ENSMUST00000177433 | 904 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm29023-201 | ENSMUST00000190543 | 325 nt | TSL 5 BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm9402-201 | ENSMUST00000196849 | 388 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm19202-201 | ENSMUST00000198096 | 808 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gtpbp4-ps6-201 | ENSMUST00000198160 | 292 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm44844-201 | ENSMUST00000207242 | 336 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | AC154576.2-202 | ENSMUST00000223916 | 688 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | AC159188.1-201 | ENSMUST00000225198 | 526 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm10088-201 | ENSMUST00000074116 | 423 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Pip-201 | ENSMUST00000075351 | 588 nt | APPRIS P1 TSL 1 (best) BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Mup1-201 | ENSMUST00000084548 | 776 nt | APPRIS ALT2 TSL 3 BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | CT025577.1-201 | ENSMUST00000220862 | 2846 nt | BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Olfr394-203 | ENSMUST00000216608 | 5628 nt | APPRIS P1 TSL 5 BASIC | 3.11 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | C87977-201 | ENSMUST00000105753 | 2446 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.1 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Cypt15-201 | ENSMUST00000115114 | 519 nt | APPRIS P1 TSL 1 (best) BASIC | 3.1 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm13329-201 | ENSMUST00000117063 | 265 nt | BASIC | 3.1 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm13378-201 | ENSMUST00000117483 | 336 nt | BASIC | 3.1 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm13210-201 | ENSMUST00000121483 | 273 nt | BASIC | 3.1 | □□□□□ -1.91 | | |
| Hoxa11 | P31311 | Gm15065-201 | ENSMUST00000121699 | 273 nt | BASIC | 3.1 | □□□□□ -1.91 | | |