Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm28951-201ENSMUST00000190742 313 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm28288-201ENSMUST00000191019 214 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm43521-201ENSMUST00000197838 255 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm43107-201ENSMUST00000198729 255 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm44409-201ENSMUST00000198810 166 ntBASIC2.95□□□□□ -1.94
ShhQ62226 CT009718.1-201ENSMUST00000220784 395 ntTSL 2 BASIC2.95□□□□□ -1.94
ShhQ62226 Gm9318-201ENSMUST00000222444 438 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm10226-201ENSMUST00000072133 255 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
ShhQ62226 1700025F22Rik-201ENSMUST00000078770 650 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
ShhQ62226 Gm22970-201ENSMUST00000083304 186 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm26166-201ENSMUST00000083788 107 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Vmn1r86-201ENSMUST00000094828 951 ntAPPRIS P2 BASIC2.95□□□□□ -1.94
ShhQ62226 Zfp280c-204ENSMUST00000114940 3863 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
ShhQ62226 Olfr839-ps1-201ENSMUST00000212127 7759 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
ShhQ62226 Olfr1211-203ENSMUST00000213412 4173 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
ShhQ62226 Gm37788-201ENSMUST00000193958 2705 ntBASIC2.94□□□□□ -1.94
ShhQ62226 4921511C20Rik-201ENSMUST00000051530 1606 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
ShhQ62226 Scai-201ENSMUST00000038874 10709 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
ShhQ62226 Zfp534-201ENSMUST00000117638 2885 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
ShhQ62226 Ighv1-54-201ENSMUST00000103525 377 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
ShhQ62226 Traj24-201ENSMUST00000103717 63 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
ShhQ62226 Gm15190-201ENSMUST00000120855 276 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm26477-201ENSMUST00000122617 323 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Olfr719-ps-201ENSMUST00000137795 252 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm14298-201ENSMUST00000139032 237 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm16356-201ENSMUST00000143300 169 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Mir1942-201ENSMUST00000157274 63 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Krtap27-1-201ENSMUST00000165580 646 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
ShhQ62226 Tshb-202ENSMUST00000170856 552 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
ShhQ62226 Gm27869-201ENSMUST00000184327 122 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm28000-201ENSMUST00000184380 85 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm37417-201ENSMUST00000195257 454 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Igkv4-65-201ENSMUST00000196986 358 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Igkv13-80-1-201ENSMUST00000197926 255 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm43739-201ENSMUST00000198294 307 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm45678-201ENSMUST00000210509 295 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Gm45616-201ENSMUST00000211711 319 ntBASIC2.94□□□□□ -1.94
ShhQ62226 AC126267.1-201ENSMUST00000214282 284 ntBASIC2.94□□□□□ -1.94
ShhQ62226 AC130829.3-201ENSMUST00000222735 154 ntBASIC2.94□□□□□ -1.94
ShhQ62226 LOC667541-201ENSMUST00000223408 278 ntBASIC2.94□□□□□ -1.94
ShhQ62226 AC165106.2-201ENSMUST00000226749 97 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Olfr1316-201ENSMUST00000099596 945 ntAPPRIS P2 BASIC2.94□□□□□ -1.94
ShhQ62226 Gm20345-201ENSMUST00000175839 2414 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Olfr1033-205ENSMUST00000218397 3973 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
ShhQ62226 Gm43268-201ENSMUST00000201536 4055 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Olfr878-203ENSMUST00000214263 4003 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
ShhQ62226 A930027P06Rik-201ENSMUST00000221298 2975 ntBASIC2.94□□□□□ -1.94
ShhQ62226 Ranbp2-201ENSMUST00000003310 9608 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
ShhQ62226 Gm37941-201ENSMUST00000192170 2309 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Olfr1216-203ENSMUST00000217000 3667 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
ShhQ62226 Vmn1r30-203ENSMUST00000227466 1798 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
ShhQ62226 Gm24172-201ENSMUST00000104127 117 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Catsper4-202ENSMUST00000105878 632 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
ShhQ62226 Gm11065-201ENSMUST00000111462 228 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm12782-201ENSMUST00000117519 727 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm11935-201ENSMUST00000118608 399 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm13541-201ENSMUST00000119519 283 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm23641-201ENSMUST00000157857 101 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm24681-201ENSMUST00000158760 107 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Cypt14-201ENSMUST00000179096 508 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
ShhQ62226 Mir6371-201ENSMUST00000184470 111 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm29397-201ENSMUST00000185205 333 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm1833-201ENSMUST00000191608 682 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gtpbp4-ps6-201ENSMUST00000198160 292 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm44266-201ENSMUST00000205235 500 ntBASIC2.93□□□□□ -1.94
ShhQ62226 AC241593.1-201ENSMUST00000224768 397 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Sprr4-201ENSMUST00000062129 231 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
ShhQ62226 Mir208a-201ENSMUST00000083498 83 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm23041-201ENSMUST00000083868 106 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm15697-201ENSMUST00000121946 2902 ntBASIC2.93□□□□□ -1.94
ShhQ62226 Gm20557-201ENSMUST00000192871 2794 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
ShhQ62226 Olfr857-202ENSMUST00000212013 2306 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
ShhQ62226 Arhgap5-202ENSMUST00000217820 2332 ntTSL 5 BASIC2.92□□□□□ -1.94
ShhQ62226 Gm19541-201ENSMUST00000184488 2868 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
ShhQ62226 Gm42755-201ENSMUST00000198533 1493 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Spata31-201ENSMUST00000070216 3232 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
ShhQ62226 Gm24119-201ENSMUST00000103979 246 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm24671-201ENSMUST00000104159 158 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Mir1198-201ENSMUST00000116995 121 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm15896-201ENSMUST00000118045 440 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Olfr1172-ps1-201ENSMUST00000121530 192 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm11819-201ENSMUST00000122192 372 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm22560-201ENSMUST00000157332 120 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm25054-201ENSMUST00000157370 97 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm24997-201ENSMUST00000157910 105 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm24005-201ENSMUST00000158459 296 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm27921-201ENSMUST00000183968 108 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm27648-201ENSMUST00000184315 107 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Mir3970-201ENSMUST00000199287 90 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm35386-201ENSMUST00000204603 629 ntTSL 3 BASIC2.92□□□□□ -1.94
ShhQ62226 Gm44085-201ENSMUST00000205056 372 ntTSL 3 BASIC2.92□□□□□ -1.94
ShhQ62226 Gm44633-201ENSMUST00000205925 439 ntTSL 3 BASIC2.92□□□□□ -1.94
ShhQ62226 Gm9377-201ENSMUST00000207227 623 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm45207-201ENSMUST00000207469 145 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm44655-201ENSMUST00000207768 423 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm44959-201ENSMUST00000209127 231 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gm39380-201ENSMUST00000214710 192 ntTSL 5 BASIC2.92□□□□□ -1.94
ShhQ62226 AC166369.3-201ENSMUST00000227286 409 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Snord7-201ENSMUST00000083781 97 ntBASIC2.92□□□□□ -1.94
ShhQ62226 Gpr174-201ENSMUST00000101294 4614 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
Retrieved 100 of 76,532 protein–RNA pairs in 94.8 ms