Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm18397-201ENSMUST00000176704 587 ntBASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Gm27402-201ENSMUST00000183890 120 ntBASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 1700022E09Rik-201ENSMUST00000185295 299 ntTSL 5 BASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Gm36997-201ENSMUST00000195090 707 ntBASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Gm37291-201ENSMUST00000195637 533 ntTSL 5 BASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Defb14-201ENSMUST00000052601 204 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Mirlet7d-201ENSMUST00000083519 103 ntBASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Olfr810-201ENSMUST00000091986 1006 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Gm16186-201ENSMUST00000120132 216 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm25805-201ENSMUST00000122788 108 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm26157-201ENSMUST00000158974 126 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm19441-201ENSMUST00000221545 330 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm23247-201ENSMUST00000083373 107 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Olfr1220-201ENSMUST00000099789 1026 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Olfr1220-202ENSMUST00000099806 1201 ntAPPRIS P1 TSL 3 BASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm8988-201ENSMUST00000155015 1240 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Mir3086-201ENSMUST00000175072 87 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm28000-201ENSMUST00000184380 85 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm29137-201ENSMUST00000190301 520 ntTSL 5 BASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Olfr1304-ps1-201ENSMUST00000208032 189 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 AC123803.1-201ENSMUST00000216093 189 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 AC154521.1-201ENSMUST00000222635 330 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 CT025525.3-201ENSMUST00000228858 366 ntBASIC0.35□□□□□ -2.35
Ccdc88bQ4QRL3 Gm14771-201ENSMUST00000118249 203 ntBASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Lsm5-203ENSMUST00000176595 274 ntTSL 5 BASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Gm10719-203ENSMUST00000179272 675 ntAPPRIS ALT2 TSL 5 BASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Gm42570-201ENSMUST00000195937 292 ntBASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Gm19147-201ENSMUST00000199622 652 ntBASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Igkv20-101-2-201ENSMUST00000200406 339 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Olfr946-ps1-201ENSMUST00000217547 341 ntBASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 Gm43498-201ENSMUST00000202002 1486 ntBASIC0.34□□□□□ -2.36
Ccdc88bQ4QRL3 n-R5s189-201ENSMUST00000122675 114 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm13941-201ENSMUST00000127918 736 ntAPPRIS P1 TSL 3 BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 1700120G11Rik-201ENSMUST00000150273 491 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm24401-201ENSMUST00000157868 91 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm23761-201ENSMUST00000158347 104 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm24229-201ENSMUST00000158830 118 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm7953-201ENSMUST00000168278 469 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm21866-201ENSMUST00000178428 543 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm21800-201ENSMUST00000178559 543 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 1700044K03Rik-201ENSMUST00000190201 377 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm44345-201ENSMUST00000199560 135 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm44088-201ENSMUST00000204595 237 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm45071-201ENSMUST00000205353 571 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 AC152951.1-201ENSMUST00000218907 266 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 AC124356.2-201ENSMUST00000221874 336 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 AC102352.1-201ENSMUST00000224187 582 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 AC125464.1-201ENSMUST00000228013 512 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Sprr4-201ENSMUST00000062129 231 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Snord49b-201ENSMUST00000082503 72 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm25802-201ENSMUST00000082639 77 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 AC159625.1-201ENSMUST00000220994 2625 ntBASIC0.33□□□□□ -2.36
Ccdc88bQ4QRL3 Gm25333-201ENSMUST00000158035 246 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Gm24221-201ENSMUST00000158833 313 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Klrc1-204ENSMUST00000169545 676 ntAPPRIS ALT2 TSL 1 (best) BASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Gm4921-201ENSMUST00000219804 992 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Gm18113-201ENSMUST00000220630 303 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Gm10038-201ENSMUST00000077233 441 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Mir137-201ENSMUST00000083635 73 ntBASIC0.32□□□□□ -2.36
Ccdc88bQ4QRL3 Gm25611-201ENSMUST00000104017 133 ntBASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Gm12825-201ENSMUST00000120249 563 ntBASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Gm13356-201ENSMUST00000121678 335 ntBASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Mir6238-201ENSMUST00000184140 129 ntBASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Olfr837-201ENSMUST00000212482 1040 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Gm25128-201ENSMUST00000083339 76 ntBASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Vmn1r85-201ENSMUST00000094829 927 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Mndal-202ENSMUST00000186442 1646 ntAPPRIS ALT2 TSL 5 BASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 4921511C20Rik-201ENSMUST00000051530 1606 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
Ccdc88bQ4QRL3 Gm24271-201ENSMUST00000102327 111 ntBASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Gm23836-201ENSMUST00000104434 129 ntBASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Gm23170-201ENSMUST00000157158 106 ntBASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Scarna8-201ENSMUST00000158333 131 ntBASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Gm16004-201ENSMUST00000161981 311 ntTSL 5 BASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Sly-201ENSMUST00000189109 797 ntAPPRIS ALT2 TSL 1 (best) BASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 CAAA01216754.4-201ENSMUST00000216416 802 ntTSL 5 BASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 AC155241.1-201ENSMUST00000222709 415 ntTSL 5 BASIC0.3□□□□□ -2.36
Ccdc88bQ4QRL3 Gm13860-201ENSMUST00000125185 452 ntTSL 3 BASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 AC105958.2-201ENSMUST00000214167 191 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm15084-201ENSMUST00000178585 1502 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm7173-202ENSMUST00000114021 1083 ntAPPRIS ALT2 TSL 5 BASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm15656-201ENSMUST00000132076 615 ntTSL 3 BASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm23332-201ENSMUST00000157424 275 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 1700006F04Rik-201ENSMUST00000188582 441 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm8403-201ENSMUST00000189712 1298 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm37568-201ENSMUST00000191755 364 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm37418-201ENSMUST00000195031 274 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm34139-201ENSMUST00000196166 294 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 CT485607.2-201ENSMUST00000214650 91 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 AC122901.2-201ENSMUST00000216926 285 ntBASIC0.29□□□□□ -2.36
Ccdc88bQ4QRL3 Gm14409-201ENSMUST00000108963 1050 ntAPPRIS P1 TSL 5 BASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Gm6025-201ENSMUST00000121517 201 ntBASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Gtpbp4-ps2-201ENSMUST00000184058 256 ntBASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Gm29011-201ENSMUST00000191059 712 ntBASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Vmn1r-ps6-202ENSMUST00000202526 135 ntTSL 5 BASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Lilrb4a-205ENSMUST00000217705 1142 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
Ccdc88bQ4QRL3 Igkv13-87-201ENSMUST00000114214 286 ntBASIC0.27□□□□□ -2.37
Ccdc88bQ4QRL3 Vmn1r-ps152-201ENSMUST00000176452 699 ntBASIC0.27□□□□□ -2.37
Ccdc88bQ4QRL3 Gm21858-202ENSMUST00000185713 923 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
Ccdc88bQ4QRL3 AC167977.1-201ENSMUST00000221384 234 ntBASIC0.27□□□□□ -2.37
Ccdc88bQ4QRL3 AC134254.5-201ENSMUST00000223436 400 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 76,532 protein–RNA pairs in 91.9 ms