Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm26449-201ENSMUST00000082452 104 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Mir30b-201ENSMUST00000083542 96 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Vmn2r89-202ENSMUST00000159734 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm43658-201ENSMUST00000202348 4176 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm3234-202ENSMUST00000223301 3250 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Olfr887-202ENSMUST00000212502 6281 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Olfr1270-202ENSMUST00000213946 4930 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Ugp2-202ENSMUST00000102875 2683 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Jrkl-201ENSMUST00000110582 3223 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm42447-201ENSMUST00000200102 2903 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Has2-201ENSMUST00000050544 4237 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Rnf40Q3U319 4930467E23Rik-201ENSMUST00000098909 2514 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm24544-201ENSMUST00000103862 110 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm13560-201ENSMUST00000121865 329 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm14330-201ENSMUST00000155455 455 ntTSL 5 BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm22558-201ENSMUST00000157326 95 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm24842-201ENSMUST00000158681 54 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm24086-201ENSMUST00000175171 98 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Mir6343-201ENSMUST00000183584 84 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm27249-201ENSMUST00000185049 328 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 1700109G14Rik-203ENSMUST00000190737 801 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Rhoay-ps1-201ENSMUST00000191243 581 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm44456-201ENSMUST00000196554 89 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm44184-201ENSMUST00000204290 132 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm22827-201ENSMUST00000083766 107 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm14015-201ENSMUST00000130634 3949 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm10730-201ENSMUST00000194097 2723 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Gm15902-202ENSMUST00000219623 3477 ntBASIC4.61□□□□□ -1.67
Rnf40Q3U319 Snhg14-209ENSMUST00000188976 2193 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
Rnf40Q3U319 Vmn2r19-201ENSMUST00000073948 2565 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm36951-201ENSMUST00000193840 2687 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm44114-201ENSMUST00000203270 2727 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Rbm41-203ENSMUST00000113007 3691 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Dnah7a-201ENSMUST00000094964 12245 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Olfr661-202ENSMUST00000214876 3790 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Rgs18-201ENSMUST00000027603 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Vmn1r77-203ENSMUST00000227320 8308 ntAPPRIS P2 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Olfr128-202ENSMUST00000216440 3644 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm25418-201ENSMUST00000104214 129 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm23709-201ENSMUST00000104364 130 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm22725-201ENSMUST00000158092 110 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm25534-201ENSMUST00000175365 125 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm26318-201ENSMUST00000176507 96 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 1500004A13Rik-206ENSMUST00000184170 576 ntTSL 3 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Trbv18-201ENSMUST00000194256 294 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm37037-201ENSMUST00000194475 424 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm37116-201ENSMUST00000195161 147 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm43604-201ENSMUST00000199799 705 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Gm44524-201ENSMUST00000203899 271 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 AC131759.1-201ENSMUST00000220642 310 ntTSL 3 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 AC124400.1-201ENSMUST00000225779 193 ntBASIC4.6□□□□□ -1.67
Rnf40Q3U319 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Stk31-204ENSMUST00000172459 2922 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Ankar-201ENSMUST00000053499 4571 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
Rnf40Q3U319 Adgre4-201ENSMUST00000025004 3491 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Rnf40Q3U319 Fgd4-206ENSMUST00000161861 8342 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Rnf40Q3U319 Mir193b-201ENSMUST00000103784 79 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 Gm11020-201ENSMUST00000109447 186 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
Rnf40Q3U319 Gm11644-201ENSMUST00000119735 150 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 Gm26084-201ENSMUST00000157903 104 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 Gm27793-201ENSMUST00000183405 76 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 Mir6400-201ENSMUST00000184870 92 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 1810064F22Rik-202ENSMUST00000187399 630 ntTSL 3 BASIC4.59□□□□□ -1.67
Rnf40Q3U319 Sult1c2-ps2-201ENSMUST00000196414 276 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 Olfr1356-202ENSMUST00000205100 3023 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
Rnf40Q3U319 Gm4945-201ENSMUST00000075152 453 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 mt-Ta-201ENSMUST00000082398 69 ntBASIC4.59□□□□□ -1.67
Rnf40Q3U319 B830012L14Rik-201ENSMUST00000182785 4505 ntTSL 5 BASIC4.59□□□□□ -1.68
Rnf40Q3U319 Gm7452-202ENSMUST00000202891 3039 ntBASIC4.59□□□□□ -1.68
Rnf40Q3U319 Ptprz1-201ENSMUST00000090568 8068 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Zfp595-203ENSMUST00000168892 4040 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Trav12d-2-201ENSMUST00000103593 341 ntAPPRIS ALT2 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Trav12n-2-201ENSMUST00000103619 341 ntAPPRIS ALT2 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm13155-201ENSMUST00000119277 646 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Dnajc19-ps-201ENSMUST00000120890 351 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm8178-201ENSMUST00000121570 646 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm23655-201ENSMUST00000122627 105 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm22536-201ENSMUST00000158171 134 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm22708-201ENSMUST00000158987 103 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Snord50a-201ENSMUST00000178154 72 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm24463-201ENSMUST00000178417 72 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm27543-201ENSMUST00000183562 177 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm27668-201ENSMUST00000184188 120 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm29452-201ENSMUST00000187996 313 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm28992-201ENSMUST00000190534 139 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm37146-201ENSMUST00000192572 463 ntTSL 3 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 AC127270.2-201ENSMUST00000221337 247 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 CT571266.1-201ENSMUST00000222859 153 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm24706-201ENSMUST00000082806 137 ntBASIC4.58□□□□□ -1.68
Rnf40Q3U319 Dync2h1-206ENSMUST00000147193 13103 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Olfr1255-202ENSMUST00000214508 2253 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Gm4631-202ENSMUST00000121393 4402 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
Rnf40Q3U319 Fsd1l-203ENSMUST00000132151 7467 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Olfr1226-204ENSMUST00000215987 3251 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 4921501E09Rik-201ENSMUST00000024121 3916 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Gm26091-201ENSMUST00000122704 82 ntBASIC4.57□□□□□ -1.68
Rnf40Q3U319 Gm12162-202ENSMUST00000129432 127 ntTSL 5 BASIC4.57□□□□□ -1.68
Rnf40Q3U319 Gm22141-201ENSMUST00000157403 277 ntBASIC4.57□□□□□ -1.68
Rnf40Q3U319 Gm22355-201ENSMUST00000175531 96 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 76,532 protein–RNA pairs in 85.7 ms