| Hoxa3 | P02831 | Gm12617-201 | ENSMUST00000121268 | 381 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23257-201 | ENSMUST00000158322 | 132 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23775-201 | ENSMUST00000158991 | 249 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Pcgf1-204 | ENSMUST00000176089 | 492 nt | TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mup-ps11-201 | ENSMUST00000178040 | 545 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mup-ps3-201 | ENSMUST00000178315 | 545 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23860-201 | ENSMUST00000179446 | 132 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Scgb2b29-ps-201 | ENSMUST00000187539 | 331 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Scgb2b14-ps-201 | ENSMUST00000189424 | 336 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm28744-201 | ENSMUST00000189939 | 340 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm40810-201 | ENSMUST00000219149 | 253 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AC142499.1-201 | ENSMUST00000220036 | 374 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm46997-201 | ENSMUST00000222108 | 217 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AL731706.1-202 | ENSMUST00000226652 | 180 nt | APPRIS P5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | 4932414N04Rik-201 | ENSMUST00000055930 | 3519 nt | APPRIS P1 TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm10298-201 | ENSMUST00000074801 | 265 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25078-201 | ENSMUST00000082530 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm22358-201 | ENSMUST00000082877 | 122 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25896-201 | ENSMUST00000083713 | 136 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25188-201 | ENSMUST00000083913 | 122 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr298-202 | ENSMUST00000213223 | 3273 nt | APPRIS P1 TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Vmn1r67-202 | ENSMUST00000226237 | 2352 nt | APPRIS ALT2 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm37494-202 | ENSMUST00000188038 | 16021 nt | TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Hhla1-201 | ENSMUST00000100584 | 2262 nt | APPRIS P1 TSL 1 (best) BASIC | 2.89 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm3055-202 | ENSMUST00000218939 | 4067 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Zfp781-202 | ENSMUST00000219144 | 4067 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Ccdc178-202 | ENSMUST00000115837 | 2979 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm9911-201 | ENSMUST00000211467 | 2802 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Xiap-201 | ENSMUST00000026978 | 6834 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr392-201 | ENSMUST00000118463 | 3643 nt | APPRIS P1 TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm26145-201 | ENSMUST00000104476 | 127 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23530-201 | ENSMUST00000104564 | 137 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm14020-201 | ENSMUST00000118165 | 662 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm13581-201 | ENSMUST00000120675 | 278 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm24936-201 | ENSMUST00000122598 | 247 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25808-201 | ENSMUST00000122784 | 284 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm15561-201 | ENSMUST00000124326 | 540 nt | TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm13667-201 | ENSMUST00000132332 | 617 nt | TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23391-201 | ENSMUST00000157579 | 104 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm20542-201 | ENSMUST00000174582 | 372 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm28825-201 | ENSMUST00000186233 | 238 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Snhg14-207 | ENSMUST00000188162 | 770 nt | TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm30341-201 | ENSMUST00000194363 | 289 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Smcp-202 | ENSMUST00000194965 | 744 nt | APPRIS P1 TSL 3 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm44337-201 | ENSMUST00000196553 | 114 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm8013-201 | ENSMUST00000200139 | 462 nt | TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm34648-201 | ENSMUST00000202460 | 338 nt | TSL 2 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm43978-201 | ENSMUST00000203491 | 451 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr511-ps1-201 | ENSMUST00000207188 | 217 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Snord35b-201 | ENSMUST00000082833 | 87 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25202-201 | ENSMUST00000082838 | 191 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23453-201 | ENSMUST00000083326 | 106 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr298-204 | ENSMUST00000217110 | 3549 nt | APPRIS P1 TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Hsf3-202 | ENSMUST00000119035 | 2691 nt | TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Lztfl1-201 | ENSMUST00000026274 | 4070 nt | APPRIS P1 TSL 1 (best) BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AC161254.1-201 | ENSMUST00000220310 | 3842 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr164-202 | ENSMUST00000216157 | 2792 nt | APPRIS P1 TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Wnk3-201 | ENSMUST00000096285 | 8551 nt | APPRIS ALT2 TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23175-201 | ENSMUST00000104371 | 132 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm11337-201 | ENSMUST00000144770 | 335 nt | TSL 2 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm22447-201 | ENSMUST00000158155 | 92 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Trav14-2-202 | ENSMUST00000184874 | 276 nt | APPRIS P1 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mir7062-201 | ENSMUST00000185038 | 66 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm28921-201 | ENSMUST00000190219 | 378 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm29023-201 | ENSMUST00000190543 | 325 nt | TSL 5 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Traj57-202 | ENSMUST00000196977 | 63 nt | APPRIS P1 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm18341-201 | ENSMUST00000197538 | 622 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mir3535-201 | ENSMUST00000197651 | 147 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Igkv11-118-201 | ENSMUST00000199448 | 346 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm44524-201 | ENSMUST00000203899 | 271 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm36776-201 | ENSMUST00000207006 | 203 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm45687-201 | ENSMUST00000209454 | 155 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AC164161.1-201 | ENSMUST00000214076 | 639 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm30674-201 | ENSMUST00000214523 | 392 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | CT030182.3-201 | ENSMUST00000225986 | 582 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mir133a-1-201 | ENSMUST00000083465 | 68 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm25651-201 | ENSMUST00000083782 | 119 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm42446-201 | ENSMUST00000199783 | 3284 nt | BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Zbtb41-201 | ENSMUST00000039867 | 8361 nt | APPRIS P1 TSL 1 (best) BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Vmn1r219-204 | ENSMUST00000228113 | 5639 nt | APPRIS P1 BASIC | 2.87 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | D930036K23Rik-201 | ENSMUST00000191894 | 3964 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr729-203 | ENSMUST00000215327 | 4220 nt | APPRIS P1 TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr729-204 | ENSMUST00000215451 | 4236 nt | APPRIS P1 TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Olfr361-202 | ENSMUST00000214969 | 2749 nt | APPRIS P1 TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm14811-201 | ENSMUST00000117070 | 117 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm13729-201 | ENSMUST00000120328 | 406 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23886-201 | ENSMUST00000122684 | 313 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm23258-201 | ENSMUST00000158319 | 106 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm20538-201 | ENSMUST00000166808 | 225 nt | APPRIS P1 TSL 3 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Ifi206-202 | ENSMUST00000169797 | 429 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Mir7578-201 | ENSMUST00000183455 | 82 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm29064-201 | ENSMUST00000187014 | 813 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm8197-201 | ENSMUST00000192906 | 363 nt | TSL 5 BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm37763-201 | ENSMUST00000193445 | 120 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Ighv1-17-1-201 | ENSMUST00000194849 | 351 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Klk1b28-ps-201 | ENSMUST00000206374 | 217 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm18000-201 | ENSMUST00000212153 | 800 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AC161054.1-201 | ENSMUST00000214319 | 184 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | AC173482.4-201 | ENSMUST00000225096 | 348 nt | BASIC | 2.86 | □□□□□ -1.95 | | |
| Hoxa3 | P02831 | Gm24533-201 | ENSMUST00000083138 | 196 nt | BASIC | 2.86 | □□□□□ -1.95 | | |