Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 mt-Nd4-201ENSMUST00000082414 1378 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ShhQ62226 Gm5596-201ENSMUST00000207988 2421 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Pcdh11x-206ENSMUST00000192677 9097 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Zfp987-201ENSMUST00000091878 2798 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
ShhQ62226 Gm36989-201ENSMUST00000193225 2160 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm24374-201ENSMUST00000104394 106 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Rps27-ps1-201ENSMUST00000118179 246 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm16218-201ENSMUST00000155424 388 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm24787-201ENSMUST00000157380 123 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm17117-201ENSMUST00000163665 299 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Mir3106-201ENSMUST00000175401 82 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm20672-201ENSMUST00000176605 261 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm22258-201ENSMUST00000177645 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm22131-201ENSMUST00000178415 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm26032-201ENSMUST00000178535 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm25210-201ENSMUST00000178813 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm25157-201ENSMUST00000178914 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm22046-201ENSMUST00000179027 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm22941-201ENSMUST00000179630 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm25471-201ENSMUST00000180126 94 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29512-201ENSMUST00000185544 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28110-201ENSMUST00000185782 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28838-201ENSMUST00000186338 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29057-201ENSMUST00000186468 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29661-201ENSMUST00000186781 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28737-201ENSMUST00000186808 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29118-201ENSMUST00000186908 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28433-201ENSMUST00000187085 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29635-201ENSMUST00000187221 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28759-201ENSMUST00000187621 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28831-201ENSMUST00000187739 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28200-201ENSMUST00000187778 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29026-201ENSMUST00000187787 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28752-201ENSMUST00000188340 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28797-201ENSMUST00000188543 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28855-201ENSMUST00000188680 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29378-201ENSMUST00000188723 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28569-201ENSMUST00000188748 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28120-201ENSMUST00000188812 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28369-201ENSMUST00000188993 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29037-201ENSMUST00000189092 313 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28909-201ENSMUST00000189406 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28705-201ENSMUST00000189548 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28861-201ENSMUST00000189681 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29180-201ENSMUST00000190003 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28939-201ENSMUST00000190351 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm28223-201ENSMUST00000190469 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29575-201ENSMUST00000190597 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29092-201ENSMUST00000190768 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm29469-201ENSMUST00000191448 315 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm37338-201ENSMUST00000191986 127 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm3952-201ENSMUST00000195093 573 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Mir6375-201ENSMUST00000197176 95 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Mir7227-201ENSMUST00000200408 59 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Gm32222-201ENSMUST00000203296 298 ntBASIC2.97□□□□□ -1.93
ShhQ62226 AC153564.2-201ENSMUST00000219464 273 ntBASIC2.97□□□□□ -1.93
ShhQ62226 AC133517.1-203ENSMUST00000225570 390 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Mir496a-201ENSMUST00000093627 79 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Olfr844-202ENSMUST00000220268 1686 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Gm42770-201ENSMUST00000199657 4155 ntBASIC2.97□□□□□ -1.93
ShhQ62226 Olfr729-203ENSMUST00000215327 4220 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Olfr729-204ENSMUST00000215451 4236 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Olfr267-202ENSMUST00000216719 4050 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Olfr1448-204ENSMUST00000216888 4064 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
ShhQ62226 Gm14440-202ENSMUST00000109051 3382 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
ShhQ62226 Dpp10-201ENSMUST00000112603 4477 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
ShhQ62226 Vmn1r46-203ENSMUST00000226715 10861 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
ShhQ62226 Vmn1r46-205ENSMUST00000228349 10861 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
ShhQ62226 Gm45039-201ENSMUST00000209181 3477 ntBASIC2.96□□□□□ -1.94
ShhQ62226 S100a5-201ENSMUST00000001049 422 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
ShhQ62226 Gm23183-201ENSMUST00000122595 323 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm22664-201ENSMUST00000158719 105 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm6374-201ENSMUST00000159051 788 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm10075-201ENSMUST00000162030 545 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Scgb2b23-ps-202ENSMUST00000167012 516 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
ShhQ62226 Gm9830-201ENSMUST00000178509 357 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm26979-201ENSMUST00000182971 217 ntTSL 3 BASIC2.96□□□□□ -1.94
ShhQ62226 Gm28641-201ENSMUST00000187783 335 ntTSL 5 BASIC2.96□□□□□ -1.94
ShhQ62226 Trbv7-201ENSMUST00000193339 402 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm37428-201ENSMUST00000193886 137 ntBASIC2.96□□□□□ -1.94
ShhQ62226 CT030247.1-201ENSMUST00000216810 267 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Olfr1202-203ENSMUST00000217059 1153 ntAPPRIS P1 TSL 3 BASIC2.96□□□□□ -1.94
ShhQ62226 Gm30534-201ENSMUST00000217928 207 ntBASIC2.96□□□□□ -1.94
ShhQ62226 AC154552.1-201ENSMUST00000222969 202 ntBASIC2.96□□□□□ -1.94
ShhQ62226 AC154527.5-201ENSMUST00000224448 496 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Olfr679-204ENSMUST00000215704 5018 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
ShhQ62226 Olfr847-202ENSMUST00000216839 2385 ntAPPRIS P1 TSL 3 BASIC2.96□□□□□ -1.94
ShhQ62226 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
ShhQ62226 A630081D01Rik-201ENSMUST00000195842 1833 ntBASIC2.96□□□□□ -1.94
ShhQ62226 Gm45557-201ENSMUST00000210004 1651 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Olfr352-202ENSMUST00000217325 3337 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
ShhQ62226 5330434G04Rik-203ENSMUST00000142109 3449 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
ShhQ62226 Gm13761-201ENSMUST00000117238 807 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm9119-201ENSMUST00000118866 495 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm22598-201ENSMUST00000157600 127 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Vmn1r-ps59-201ENSMUST00000172698 199 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm22448-201ENSMUST00000179254 107 ntBASIC2.95□□□□□ -1.94
ShhQ62226 1700025F22Rik-204ENSMUST00000181567 578 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
ShhQ62226 Gm27783-201ENSMUST00000183534 105 ntBASIC2.95□□□□□ -1.94
ShhQ62226 Gm28959-201ENSMUST00000186713 551 ntTSL 5 BASIC2.95□□□□□ -1.94
Retrieved 100 of 76,532 protein–RNA pairs in 80.2 ms