Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm17991-201ENSMUST00000208139 297 ntBASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 CT030687.1-201ENSMUST00000221854 162 ntBASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 Il1f8-201ENSMUST00000028363 1217 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 AC127302.3-201ENSMUST00000215480 2791 ntBASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 Snord87-201ENSMUST00000175437 87 ntBASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 Olfr835-201ENSMUST00000059315 936 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
Ccdc88bQ4QRL3 Gm12191-201ENSMUST00000118307 348 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Rpl30-ps1-201ENSMUST00000119767 348 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Gm26152-201ENSMUST00000157427 101 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Gm16577-201ENSMUST00000161579 471 ntTSL 3 BASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Gm37175-201ENSMUST00000192023 587 ntTSL 5 BASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Gm38231-201ENSMUST00000192030 347 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Olfr1556-ps1-201ENSMUST00000204688 466 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 AC122242.1-201ENSMUST00000224650 304 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 AC161758.1-201ENSMUST00000226123 310 ntBASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Tas2r131-201ENSMUST00000082085 1036 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
Ccdc88bQ4QRL3 Gm14426-201ENSMUST00000128562 249 ntTSL 3 BASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25624-201ENSMUST00000157222 275 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Gm22560-201ENSMUST00000157332 120 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Nron-204ENSMUST00000158971 370 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Gm8161-201ENSMUST00000168739 481 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Ranbp2-ps8-201ENSMUST00000183723 345 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Gm29397-201ENSMUST00000185205 333 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Trbv24-201ENSMUST00000194614 347 ntBASIC0.46□□□□□ -2.34
Ccdc88bQ4QRL3 Gm22489-201ENSMUST00000116813 62 ntBASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 Gm3025-201ENSMUST00000163454 489 ntBASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 Gm3111-201ENSMUST00000167426 490 ntBASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 Olfr1409-ps1-201ENSMUST00000194013 252 ntBASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 4930598N05Rik-205ENSMUST00000208693 873 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 AC142113.2-201ENSMUST00000217425 748 ntBASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 Olfr1048-201ENSMUST00000099900 963 ntAPPRIS P2 BASIC0.45□□□□□ -2.34
Ccdc88bQ4QRL3 Gm3298-201ENSMUST00000165289 516 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25596-201ENSMUST00000178368 107 ntBASIC0.44□□□□□ -2.34
Ccdc88bQ4QRL3 Gm27999-201ENSMUST00000183539 193 ntBASIC0.44□□□□□ -2.34
Ccdc88bQ4QRL3 AC153930.1-201ENSMUST00000220016 358 ntTSL 3 BASIC0.44□□□□□ -2.34
Ccdc88bQ4QRL3 1700127F24Rik-202ENSMUST00000223214 259 ntTSL 3 BASIC0.44□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25544-201ENSMUST00000122676 120 ntBASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Lce6a-201ENSMUST00000138403 795 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Gm43090-201ENSMUST00000202459 314 ntBASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Snhg1-208ENSMUST00000206029 408 ntTSL 3 BASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Snora41-201ENSMUST00000082668 132 ntBASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25138-201ENSMUST00000083248 136 ntBASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Mir129-2-201ENSMUST00000083577 90 ntBASIC0.43□□□□□ -2.34
Ccdc88bQ4QRL3 Pate3-201ENSMUST00000178236 1329 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm24951-201ENSMUST00000102182 109 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm12368-201ENSMUST00000122251 434 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm22962-201ENSMUST00000157962 73 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25335-201ENSMUST00000158043 103 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25025-201ENSMUST00000175018 111 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Scgb1b8-ps-201ENSMUST00000189652 249 ntBASIC0.42□□□□□ -2.34
Ccdc88bQ4QRL3 Gm7846-201ENSMUST00000145844 274 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm2966-201ENSMUST00000166052 481 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm17204-201ENSMUST00000167936 478 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Vmn2r-ps64-201ENSMUST00000173690 523 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm7858-201ENSMUST00000190177 622 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm42824-201ENSMUST00000199361 247 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm45907-201ENSMUST00000213023 193 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 AC110380.1-201ENSMUST00000226987 389 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 AC157772.2-201ENSMUST00000228202 259 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm13723-201ENSMUST00000130722 5036 ntAPPRIS P1 TSL 2 BASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 AA413626-201ENSMUST00000121125 494 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Mir3066-201ENSMUST00000175296 83 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm29005-201ENSMUST00000186773 320 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 2900035J10Rik-201ENSMUST00000194966 532 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm36017-201ENSMUST00000199005 923 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm43407-201ENSMUST00000199816 317 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm44727-201ENSMUST00000204225 451 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm25099-201ENSMUST00000093716 116 ntBASIC0.41□□□□□ -2.34
Ccdc88bQ4QRL3 Gm15205-201ENSMUST00000129329 632 ntTSL 5 BASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm11998-201ENSMUST00000146304 972 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm22337-201ENSMUST00000157721 132 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm17052-201ENSMUST00000165496 289 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm12002-203ENSMUST00000174550 923 ntTSL 3 BASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Mir5129-201ENSMUST00000174938 78 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm23144-201ENSMUST00000180226 107 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm27717-201ENSMUST00000183933 151 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Trbv12-3-201ENSMUST00000192675 372 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm37576-201ENSMUST00000194228 372 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Mir92-2-201ENSMUST00000083679 91 ntBASIC0.4□□□□□ -2.35
Ccdc88bQ4QRL3 Gm22477-201ENSMUST00000122569 316 ntBASIC0.39□□□□□ -2.35
Ccdc88bQ4QRL3 Gm21905-201ENSMUST00000177616 87 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
Ccdc88bQ4QRL3 4930590L20Rik-201ENSMUST00000193820 553 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
Ccdc88bQ4QRL3 Olfr852-ps1-201ENSMUST00000212273 226 ntBASIC0.39□□□□□ -2.35
Ccdc88bQ4QRL3 Gm11813-201ENSMUST00000118586 291 ntBASIC0.38□□□□□ -2.35
Ccdc88bQ4QRL3 Mup-ps21-201ENSMUST00000119998 448 ntBASIC0.38□□□□□ -2.35
Ccdc88bQ4QRL3 Gm20896-202ENSMUST00000188585 921 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
Ccdc88bQ4QRL3 Gm18268-201ENSMUST00000208445 943 ntBASIC0.38□□□□□ -2.35
Ccdc88bQ4QRL3 AC164086.1-201ENSMUST00000221038 289 ntBASIC0.38□□□□□ -2.35
Ccdc88bQ4QRL3 Gm13085-201ENSMUST00000118356 171 ntBASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm12889-201ENSMUST00000118684 241 ntBASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm20409-201ENSMUST00000173457 130 ntBASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm25248-201ENSMUST00000175473 98 ntBASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm21518-202ENSMUST00000186938 922 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 1700101O22Rik-201ENSMUST00000187396 339 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm21209-202ENSMUST00000189354 922 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 4930511M18Rik-201ENSMUST00000197811 679 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm10264-201ENSMUST00000220589 429 ntBASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Pdcd10-201ENSMUST00000029424 907 ntTSL 5 BASIC0.37□□□□□ -2.35
Ccdc88bQ4QRL3 Gm13806-201ENSMUST00000117822 325 ntBASIC0.36□□□□□ -2.35
Ccdc88bQ4QRL3 Vmn1r-ps26-201ENSMUST00000174239 840 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 76,532 protein–RNA pairs in 106.6 ms