Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm25141-201ENSMUST00000083177 107 ntBASIC3.84□□□□□ -1.79
Ddb1Q3U1J4 Gm25257-201ENSMUST00000083907 110 ntBASIC3.84□□□□□ -1.79
Ddb1Q3U1J4 Mup1-201ENSMUST00000084548 776 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
Ddb1Q3U1J4 Defb41-201ENSMUST00000088463 467 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
Ddb1Q3U1J4 Rps24-ps2-201ENSMUST00000091375 395 ntBASIC3.84□□□□□ -1.79
Ddb1Q3U1J4 Gm42446-201ENSMUST00000199783 3284 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Olfr772-202ENSMUST00000214672 2955 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm13903-201ENSMUST00000120945 193 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm13431-201ENSMUST00000122948 476 ntTSL 2 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm15669-201ENSMUST00000147834 526 ntTSL 3 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm23557-201ENSMUST00000157820 138 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm20450-201ENSMUST00000173652 147 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Ang-ps3-201ENSMUST00000177964 433 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm7329-201ENSMUST00000185915 210 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm20923-201ENSMUST00000190009 319 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm28951-201ENSMUST00000190742 313 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm3952-201ENSMUST00000195093 573 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm36551-201ENSMUST00000196787 300 ntTSL 5 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Obox4-ps25-201ENSMUST00000199090 210 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm43529-201ENSMUST00000199178 412 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 4930596I21Rik-201ENSMUST00000200494 461 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm44266-201ENSMUST00000205235 500 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm43154-210ENSMUST00000210190 1051 ntTSL 5 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 2900042G08Rik-201ENSMUST00000221776 650 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Gm24948-201ENSMUST00000082866 207 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Rpl31-ps1-201ENSMUST00000085128 378 ntBASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Vmn1r185-202ENSMUST00000226694 5656 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Vmn1r185-208ENSMUST00000228004 5682 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Olfr665-204ENSMUST00000216971 3248 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
Ddb1Q3U1J4 Zfp729b-201ENSMUST00000012873 4835 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Olfr309-202ENSMUST00000174158 3293 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Olfr164-202ENSMUST00000216157 2792 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 2610300M13Rik-202ENSMUST00000203716 1787 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Rgs13-201ENSMUST00000052375 1510 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Dmd-203ENSMUST00000114000 14910 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm11060-201ENSMUST00000111107 72 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm13672-201ENSMUST00000117554 459 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm22957-201ENSMUST00000122511 123 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm23956-201ENSMUST00000157211 119 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm22666-201ENSMUST00000158717 164 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm10772-201ENSMUST00000167981 255 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 4930518C09Rik-201ENSMUST00000172700 478 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm23053-201ENSMUST00000175136 96 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm22263-201ENSMUST00000180060 104 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm27520-201ENSMUST00000184872 81 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm28257-201ENSMUST00000185244 463 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm28629-201ENSMUST00000187309 263 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm42925-201ENSMUST00000197359 285 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 AC134596.2-201ENSMUST00000222158 171 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 CT025579.1-201ENSMUST00000223779 366 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 AC154262.1-201ENSMUST00000225976 286 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Gm23412-201ENSMUST00000083017 107 ntBASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Olfr901-203ENSMUST00000216644 2731 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Vmn2r23-201ENSMUST00000172391 2602 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Strbp-201ENSMUST00000028279 16348 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Olfr898-203ENSMUST00000217063 4169 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Syne2-210ENSMUST00000143031 21704 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
Ddb1Q3U1J4 Npy6r-201ENSMUST00000042747 2567 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm14841-201ENSMUST00000121067 758 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm22328-201ENSMUST00000158074 112 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Vmn2r-ps34-201ENSMUST00000177433 904 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm27410-201ENSMUST00000183851 115 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm32033-201ENSMUST00000193483 339 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm26379-202ENSMUST00000200225 132 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm44811-201ENSMUST00000209120 228 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Olfr1070-ps1-201ENSMUST00000215939 388 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm7422-201ENSMUST00000220115 640 ntBASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Zfp119a-201ENSMUST00000079642 2018 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Gm20557-201ENSMUST00000192871 2794 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Olfr918-202ENSMUST00000215461 3783 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 Olfr186-203ENSMUST00000216415 2323 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
Ddb1Q3U1J4 AC121844.2-201ENSMUST00000219067 2066 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Spata31-201ENSMUST00000070216 3232 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm26342-201ENSMUST00000104557 129 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm15010-201ENSMUST00000117153 407 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm24914-201ENSMUST00000157285 313 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Mir5624-201ENSMUST00000176635 61 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm20660-201ENSMUST00000177515 289 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm22951-201ENSMUST00000179471 107 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Snhg14-203ENSMUST00000185815 670 ntTSL 5 BASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm43239-201ENSMUST00000200131 201 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm6842-201ENSMUST00000211361 390 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 AC130821.1-201ENSMUST00000221997 293 ntBASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm39473-201ENSMUST00000223498 522 ntTSL 3 BASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm9772-201ENSMUST00000075018 408 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
Ddb1Q3U1J4 Gm45257-201ENSMUST00000210301 3998 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Olfr1240-202ENSMUST00000216123 4603 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Mir701-201ENSMUST00000102208 109 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm23128-201ENSMUST00000104257 132 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Vmn1r-ps125-201ENSMUST00000117767 290 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm27510-201ENSMUST00000158214 64 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Rpl26-ps4-201ENSMUST00000170279 438 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm17186-201ENSMUST00000171742 456 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm23128-202ENSMUST00000196578 133 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 4930431P19Rik-201ENSMUST00000207570 451 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm45273-201ENSMUST00000211559 281 ntBASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC3.79□□□□□ -1.8
Ddb1Q3U1J4 Gm22247-201ENSMUST00000082476 131 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 76,532 protein–RNA pairs in 124.5 ms