Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 4930524B17Rik-201ENSMUST00000200755 1870 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
Traf1P39428 Gm12934-201ENSMUST00000119221 343 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm13903-201ENSMUST00000120945 193 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm24418-201ENSMUST00000177597 79 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm24639-201ENSMUST00000178518 79 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm23076-201ENSMUST00000179082 79 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm25077-201ENSMUST00000179157 79 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm26622-201ENSMUST00000180520 298 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Mir7014-201ENSMUST00000183853 63 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm27957-201ENSMUST00000184054 127 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm27399-201ENSMUST00000184250 78 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm27753-201ENSMUST00000184742 203 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm36992-201ENSMUST00000195463 428 ntTSL 3 BASIC2.7□□□□□ -1.98
Traf1P39428 AC158622.1-201ENSMUST00000217107 230 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Sult3a1-202ENSMUST00000218204 1154 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
Traf1P39428 Gm18113-201ENSMUST00000220630 303 ntBASIC2.7□□□□□ -1.98
Traf1P39428 AC183092.2-201ENSMUST00000225542 1153 ntBASIC2.7□□□□□ -1.98
Traf1P39428 AC117656.1-201ENSMUST00000225826 339 ntBASIC2.7□□□□□ -1.98
Traf1P39428 AC165106.2-201ENSMUST00000226749 97 ntBASIC2.7□□□□□ -1.98
Traf1P39428 Gm25698-201ENSMUST00000082897 107 ntBASIC2.7□□□□□ -1.98
Traf1P39428 1110057P08Rik-201ENSMUST00000089097 465 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
Traf1P39428 Olfr659-202ENSMUST00000214986 4842 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
Traf1P39428 Olfr814-202ENSMUST00000213742 3798 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
Traf1P39428 Btf3l4-201ENSMUST00000102739 723 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
Traf1P39428 Gm14293-201ENSMUST00000118528 577 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm23184-201ENSMUST00000122594 131 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm14978-201ENSMUST00000129000 304 ntTSL 3 BASIC2.69□□□□□ -1.98
Traf1P39428 Gm27396-201ENSMUST00000157708 58 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm24438-201ENSMUST00000157893 115 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm22666-201ENSMUST00000158717 164 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm43722-201ENSMUST00000196054 124 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm43245-201ENSMUST00000197603 468 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm43587-201ENSMUST00000199590 204 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm19441-201ENSMUST00000221545 330 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Gm45393-201ENSMUST00000211634 2631 ntBASIC2.69□□□□□ -1.98
Traf1P39428 Lrrc19-202ENSMUST00000107101 2820 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
Traf1P39428 Adgrg4-205ENSMUST00000154818 8857 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
Traf1P39428 Igkv2-109-201ENSMUST00000103322 374 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
Traf1P39428 Gm23551-201ENSMUST00000116852 121 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm12550-201ENSMUST00000118478 329 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Rhox11-ps1-201ENSMUST00000121945 387 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm13409-201ENSMUST00000122072 546 ntBASIC2.68□□□□□ -1.98
Traf1P39428 n-R5s191-201ENSMUST00000122724 116 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm44477-201ENSMUST00000199661 110 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm44870-201ENSMUST00000207291 357 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm18854-201ENSMUST00000211196 329 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Gm45791-201ENSMUST00000212908 352 ntBASIC2.68□□□□□ -1.98
Traf1P39428 AC124346.1-201ENSMUST00000218539 364 ntBASIC2.68□□□□□ -1.98
Traf1P39428 AC132221.1-201ENSMUST00000220577 3841 ntBASIC2.68□□□□□ -1.98
Traf1P39428 AC131759.1-201ENSMUST00000220642 310 ntTSL 3 BASIC2.68□□□□□ -1.98
Traf1P39428 AC159232.1-201ENSMUST00000222297 580 ntTSL 3 BASIC2.68□□□□□ -1.98
Traf1P39428 AC108945.1-201ENSMUST00000226477 94 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Sult2a6-201ENSMUST00000076576 961 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
Traf1P39428 Gm15314-201ENSMUST00000120740 1887 ntBASIC2.68□□□□□ -1.98
Traf1P39428 Olfr1018-202ENSMUST00000214416 3186 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
Traf1P39428 Gm13212-202ENSMUST00000105739 3595 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
Traf1P39428 Vmn1r185-204ENSMUST00000227411 4928 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
Traf1P39428 AC152979.2-201ENSMUST00000219702 3814 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Skint6-202ENSMUST00000171224 3723 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
Traf1P39428 Gm1980-201ENSMUST00000123131 2306 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm11363-201ENSMUST00000121672 548 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm25559-201ENSMUST00000157182 74 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm22227-201ENSMUST00000157356 259 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm22257-201ENSMUST00000158687 301 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm22664-201ENSMUST00000158719 105 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Ear-ps8-201ENSMUST00000161935 354 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm16561-201ENSMUST00000163001 192 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm25642-201ENSMUST00000175137 66 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm23725-201ENSMUST00000177876 107 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm21788-201ENSMUST00000177878 543 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
Traf1P39428 Gm28627-201ENSMUST00000186141 453 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Mir7118-201ENSMUST00000197760 61 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm34411-201ENSMUST00000201180 280 ntTSL 3 BASIC2.67□□□□□ -1.98
Traf1P39428 AC162387.1-201ENSMUST00000213369 213 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Olfr1202-203ENSMUST00000217059 1153 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
Traf1P39428 Gm34408-201ENSMUST00000222104 655 ntTSL 5 BASIC2.67□□□□□ -1.98
Traf1P39428 Gm9318-201ENSMUST00000222444 438 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm22620-201ENSMUST00000082700 133 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Gm25628-201ENSMUST00000084002 105 ntBASIC2.67□□□□□ -1.98
Traf1P39428 Cd209e-201ENSMUST00000033888 1802 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
Traf1P39428 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
Traf1P39428 Gm21814-203ENSMUST00000203729 1352 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
Traf1P39428 Gm37761-201ENSMUST00000194989 2098 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Gm25094-201ENSMUST00000103992 131 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Rpl23a-ps6-201ENSMUST00000119466 468 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Lce6a-202ENSMUST00000170676 485 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
Traf1P39428 Gm37361-201ENSMUST00000194345 132 ntBASIC2.66□□□□□ -1.98
Traf1P39428 AC164567.2-201ENSMUST00000219363 445 ntBASIC2.66□□□□□ -1.98
Traf1P39428 AC192333.2-201ENSMUST00000224771 196 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Defb37-201ENSMUST00000066282 352 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
Traf1P39428 Gm25853-201ENSMUST00000082793 132 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Gm8300-201ENSMUST00000110152 1873 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
Traf1P39428 Zc3h14-201ENSMUST00000021399 1430 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
Traf1P39428 Gm38255-201ENSMUST00000194910 2996 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Olfr1201-203ENSMUST00000216213 2602 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
Traf1P39428 Gm42482-201ENSMUST00000198904 1947 ntBASIC2.66□□□□□ -1.98
Traf1P39428 Ifi203-205ENSMUST00000129829 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.98
Traf1P39428 Gm4128-201ENSMUST00000154338 461 ntTSL 3 BASIC2.65□□□□□ -1.99
Traf1P39428 Gm25335-201ENSMUST00000158043 103 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 76,532 protein–RNA pairs in 166.8 ms