Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm38127-201ENSMUST00000191978 468 ntTSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Gm7871-201ENSMUST00000195346 618 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm44419-201ENSMUST00000203338 229 ntBASIC3.01□□□□□ -1.93
ShhQ62226 AL929417.1-201ENSMUST00000214901 124 ntBASIC3.01□□□□□ -1.93
ShhQ62226 AC144942.1-201ENSMUST00000220425 597 ntTSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 AC164304.1-201ENSMUST00000226920 272 ntBASIC3.01□□□□□ -1.93
ShhQ62226 AC170600.1-201ENSMUST00000228763 277 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm26066-201ENSMUST00000083385 109 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm10234-201ENSMUST00000089304 60 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Olfr1109-202ENSMUST00000214636 2483 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Zfp934-202ENSMUST00000101547 2147 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Vmn2r81-201ENSMUST00000020547 3276 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
ShhQ62226 Olfr1093-202ENSMUST00000213354 2240 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
ShhQ62226 Olfr397-204ENSMUST00000216291 4168 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
ShhQ62226 Gm43663-201ENSMUST00000198643 1505 ntBASIC3□□□□□ -1.93
ShhQ62226 Trbv17-201ENSMUST00000103275 374 ntAPPRIS P1 BASIC3□□□□□ -1.93
ShhQ62226 Snord70-201ENSMUST00000104157 87 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm22674-201ENSMUST00000104413 131 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm24385-201ENSMUST00000122694 350 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm25162-201ENSMUST00000158906 159 ntBASIC3□□□□□ -1.93
ShhQ62226 Scgb2b17-202ENSMUST00000182640 420 ntAPPRIS ALT2 TSL 3 BASIC3□□□□□ -1.93
ShhQ62226 Mir6346-201ENSMUST00000183982 81 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm28995-201ENSMUST00000186625 261 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm20923-201ENSMUST00000190009 319 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm21088-201ENSMUST00000190875 316 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm43355-201ENSMUST00000196541 346 ntBASIC3□□□□□ -1.93
ShhQ62226 Igkv2-95-1-201ENSMUST00000200279 272 ntBASIC3□□□□□ -1.93
ShhQ62226 Igkv1-136-201ENSMUST00000200635 297 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm44881-201ENSMUST00000205425 367 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm45315-201ENSMUST00000209283 333 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm24474-201ENSMUST00000220504 469 ntTSL 2 BASIC3□□□□□ -1.93
ShhQ62226 Gm35732-201ENSMUST00000221737 356 ntTSL 3 BASIC3□□□□□ -1.93
ShhQ62226 Zfp706-205ENSMUST00000228275 481 ntAPPRIS P1 BASIC3□□□□□ -1.93
ShhQ62226 AC113031.4-201ENSMUST00000228381 514 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm4945-201ENSMUST00000075152 453 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm23406-201ENSMUST00000082537 122 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm23850-201ENSMUST00000083830 169 ntBASIC3□□□□□ -1.93
ShhQ62226 Rps24-ps2-201ENSMUST00000091375 395 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm44842-201ENSMUST00000209173 3372 ntBASIC3□□□□□ -1.93
ShhQ62226 Gm21034-201ENSMUST00000207390 2608 ntBASIC3□□□□□ -1.93
ShhQ62226 Olfr299-202ENSMUST00000217253 4479 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Vmn2r38-201ENSMUST00000108554 3663 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Olfr807-202ENSMUST00000213379 1866 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Olfr1018-202ENSMUST00000214416 3186 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Fnd3c2-201ENSMUST00000091282 3662 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
ShhQ62226 Gm22779-201ENSMUST00000104085 107 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Scgb1b24-201ENSMUST00000108087 279 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
ShhQ62226 Rpl23a-ps6-201ENSMUST00000119466 468 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Rpl31-ps6-201ENSMUST00000119959 378 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm13424-201ENSMUST00000122301 354 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm43439-201ENSMUST00000138710 322 ntTSL 3 BASIC2.99□□□□□ -1.93
ShhQ62226 Gm14389-201ENSMUST00000140453 241 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm15521-201ENSMUST00000141752 835 ntTSL 2 BASIC2.99□□□□□ -1.93
ShhQ62226 Gm24061-201ENSMUST00000157489 120 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm22532-201ENSMUST00000158822 140 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm16289-201ENSMUST00000162079 183 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm25121-201ENSMUST00000179846 79 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm26585-201ENSMUST00000180890 630 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm28358-202ENSMUST00000189292 223 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Ighv1-46-201ENSMUST00000193988 351 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Ighv1-17-1-201ENSMUST00000194849 351 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm6615-201ENSMUST00000199426 631 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm44072-201ENSMUST00000203666 383 ntTSL 3 BASIC2.99□□□□□ -1.93
ShhQ62226 Gm44519-201ENSMUST00000206486 122 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm44964-201ENSMUST00000207011 273 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Olfr468-ps1-201ENSMUST00000207203 593 ntBASIC2.99□□□□□ -1.93
ShhQ62226 AC158798.1-201ENSMUST00000219714 711 ntTSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Gm39473-201ENSMUST00000223498 522 ntTSL 3 BASIC2.99□□□□□ -1.93
ShhQ62226 AC108416.2-201ENSMUST00000226792 367 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm26457-201ENSMUST00000082678 78 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm25856-201ENSMUST00000082786 75 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Gm23517-201ENSMUST00000082830 192 ntBASIC2.99□□□□□ -1.93
ShhQ62226 Olfr218-202ENSMUST00000215844 3410 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Olfr652-202ENSMUST00000215410 4672 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ShhQ62226 Btla-202ENSMUST00000102802 3251 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
ShhQ62226 Vmn1r13-204ENSMUST00000227421 5235 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ShhQ62226 Thoc1-201ENSMUST00000025137 3855 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
ShhQ62226 Gm22939-201ENSMUST00000103958 131 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Mir669g-201ENSMUST00000116809 123 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm26156-201ENSMUST00000116999 123 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm13504-201ENSMUST00000117490 316 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm12785-201ENSMUST00000122052 172 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm15733-201ENSMUST00000132957 242 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm22722-201ENSMUST00000157467 132 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm24691-201ENSMUST00000157762 140 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm22833-201ENSMUST00000158292 132 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm24885-201ENSMUST00000158783 270 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm23196-201ENSMUST00000158806 107 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm24618-201ENSMUST00000177718 94 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm23953-201ENSMUST00000178214 94 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm26332-201ENSMUST00000179813 94 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm22863-201ENSMUST00000180265 94 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Rpl23a-ps7-201ENSMUST00000185437 460 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm31415-201ENSMUST00000194963 344 ntTSL 5 BASIC2.98□□□□□ -1.93
ShhQ62226 Olfr277-ps1-201ENSMUST00000205749 285 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm45395-201ENSMUST00000209891 559 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Olfr746-201ENSMUST00000080616 945 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ShhQ62226 Gm10337-201ENSMUST00000096145 165 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ShhQ62226 Gm650-201ENSMUST00000144428 1551 ntBASIC2.98□□□□□ -1.93
ShhQ62226 Gm38706-201ENSMUST00000182397 2617 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 76,532 protein–RNA pairs in 104.7 ms