| Foxa3 | P35584 | Gm24499-201 | ENSMUST00000158446 | 104 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24577-201 | ENSMUST00000158580 | 63 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Agmo-205 | ENSMUST00000160768 | 741 nt | TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm15900-201 | ENSMUST00000161584 | 342 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm15914-201 | ENSMUST00000161922 | 309 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23191-201 | ENSMUST00000179147 | 107 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir6335-201 | ENSMUST00000184081 | 98 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm10105-201 | ENSMUST00000184601 | 270 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Ranbp2-ps10-201 | ENSMUST00000185097 | 385 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm28710-201 | ENSMUST00000186866 | 489 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm37104-201 | ENSMUST00000193278 | 196 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Vamp4-208 | ENSMUST00000194810 | 600 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir3069-201 | ENSMUST00000198802 | 65 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir691-201 | ENSMUST00000199719 | 78 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm43955-201 | ENSMUST00000204332 | 142 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm45730-201 | ENSMUST00000212560 | 395 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Lilr4b-211 | ENSMUST00000219661 | 1143 nt | TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm19326-201 | ENSMUST00000219818 | 326 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25796-201 | ENSMUST00000082645 | 163 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25475-201 | ENSMUST00000082825 | 180 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm26111-201 | ENSMUST00000083969 | 106 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm22365-201 | ENSMUST00000093750 | 117 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC153967.1-201 | ENSMUST00000219333 | 3190 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Fbxw21-201 | ENSMUST00000054925 | 1512 nt | APPRIS P2 TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Olfr1181-203 | ENSMUST00000213190 | 3934 nt | APPRIS P1 TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Vmn2r-ps83-201 | ENSMUST00000173787 | 2368 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir687-201 | ENSMUST00000102166 | 89 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Ighv3-6-201 | ENSMUST00000103481 | 342 nt | APPRIS ALT2 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm22270-201 | ENSMUST00000104034 | 132 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm14013-201 | ENSMUST00000119006 | 270 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm11254-201 | ENSMUST00000122368 | 653 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | n-R5s216-201 | ENSMUST00000122755 | 112 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm13601-201 | ENSMUST00000142314 | 404 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm15669-201 | ENSMUST00000147834 | 526 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25827-201 | ENSMUST00000157089 | 107 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23642-201 | ENSMUST00000157858 | 258 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm22668-201 | ENSMUST00000158716 | 260 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm17072-201 | ENSMUST00000166673 | 658 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Vmn1r-ps31-201 | ENSMUST00000174112 | 238 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25243-201 | ENSMUST00000174912 | 207 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25748-201 | ENSMUST00000175487 | 70 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23268-201 | ENSMUST00000175494 | 78 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm22131-201 | ENSMUST00000178415 | 94 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Esp4-201 | ENSMUST00000178498 | 553 nt | APPRIS P1 TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm29229-201 | ENSMUST00000188874 | 323 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm28951-201 | ENSMUST00000190742 | 313 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm32033-201 | ENSMUST00000193483 | 339 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Trbv6-201 | ENSMUST00000193743 | 276 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm37807-201 | ENSMUST00000194310 | 190 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Ighv1-32-201 | ENSMUST00000195149 | 351 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm38171-201 | ENSMUST00000195716 | 478 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Traj57-202 | ENSMUST00000196977 | 63 nt | APPRIS P1 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir7232-201 | ENSMUST00000197929 | 74 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir9-1-201 | ENSMUST00000199907 | 89 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm44909-201 | ENSMUST00000208756 | 165 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC161426.1-201 | ENSMUST00000214137 | 286 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm30534-201 | ENSMUST00000217928 | 207 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC166358.7-201 | ENSMUST00000221132 | 108 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC122465.2-201 | ENSMUST00000221774 | 354 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC140477.1-201 | ENSMUST00000222354 | 246 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC125543.5-201 | ENSMUST00000222799 | 108 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AC125223.1-203 | ENSMUST00000225304 | 498 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Sval1-201 | ENSMUST00000031898 | 615 nt | APPRIS P1 TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | n-R5s197-201 | ENSMUST00000083302 | 119 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir208a-201 | ENSMUST00000083498 | 83 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25512-201 | ENSMUST00000083863 | 107 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Arhgap5-202 | ENSMUST00000217820 | 2332 nt | TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Ccdc178-201 | ENSMUST00000025160 | 3335 nt | APPRIS P1 TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | AW554918-203 | ENSMUST00000100131 | 1684 nt | TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Snord116l9-201 | ENSMUST00000101891 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm26504-201 | ENSMUST00000102033 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Mir759-201 | ENSMUST00000103254 | 98 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24127-201 | ENSMUST00000104110 | 130 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25539-201 | ENSMUST00000116886 | 122 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm7164-201 | ENSMUST00000117503 | 450 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Rpl23a-ps13-201 | ENSMUST00000120350 | 441 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm13153-201 | ENSMUST00000120969 | 637 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm13862-201 | ENSMUST00000121220 | 197 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm15718-201 | ENSMUST00000131085 | 311 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm16155-201 | ENSMUST00000155180 | 338 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm15961-201 | ENSMUST00000156090 | 266 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23169-201 | ENSMUST00000157157 | 112 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25280-201 | ENSMUST00000157269 | 101 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24911-201 | ENSMUST00000157292 | 136 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24191-201 | ENSMUST00000157977 | 122 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25490-201 | ENSMUST00000158734 | 130 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23704-201 | ENSMUST00000158844 | 340 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24737-201 | ENSMUST00000158861 | 100 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Ear10-201 | ENSMUST00000159175 | 678 nt | APPRIS P1 TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Lce6a-202 | ENSMUST00000170676 | 485 nt | APPRIS P1 TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm8114-201 | ENSMUST00000172225 | 484 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm20484-201 | ENSMUST00000173738 | 231 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm26502-201 | ENSMUST00000177732 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Snord116l13-201 | ENSMUST00000177737 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm25350-201 | ENSMUST00000177849 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Snord116l15-201 | ENSMUST00000177940 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm23446-201 | ENSMUST00000177977 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Snord116l4-201 | ENSMUST00000177982 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm26201-201 | ENSMUST00000178047 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Foxa3 | P35584 | Gm24711-201 | ENSMUST00000178062 | 94 nt | BASIC | 2.06 | □□□□□ -2.08 | | |