| Hoxa3 | P02831 | Gm24096-201 | ENSMUST00000103905 | 110 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22115-201 | ENSMUST00000103976 | 133 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm23923-201 | ENSMUST00000104108 | 133 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm15526-201 | ENSMUST00000112504 | 204 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm13355-201 | ENSMUST00000117996 | 317 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm14687-201 | ENSMUST00000120206 | 363 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm26256-201 | ENSMUST00000122499 | 186 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm27723-201 | ENSMUST00000157398 | 63 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm23667-201 | ENSMUST00000157466 | 120 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22380-201 | ENSMUST00000157479 | 95 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm28155-201 | ENSMUST00000191066 | 151 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Trav5d-2-201 | ENSMUST00000196107 | 275 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm23370-202 | ENSMUST00000197008 | 129 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Trav5n-2-201 | ENSMUST00000197136 | 275 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm32381-201 | ENSMUST00000203192 | 476 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm44010-201 | ENSMUST00000204432 | 331 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC125374.2-201 | ENSMUST00000214278 | 162 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm21007-201 | ENSMUST00000221024 | 326 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC166113.1-201 | ENSMUST00000225258 | 475 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC165106.2-201 | ENSMUST00000226749 | 97 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC160550.3-201 | ENSMUST00000226818 | 400 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm25856-201 | ENSMUST00000082786 | 75 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm25630-201 | ENSMUST00000084000 | 162 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm10161-201 | ENSMUST00000091506 | 204 nt | BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm15292-201 | ENSMUST00000098895 | 385 nt | APPRIS P1 TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr1370-203 | ENSMUST00000215357 | 4285 nt | APPRIS P1 TSL 5 BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Pkhd1l1-202 | ENSMUST00000166957 | 12747 nt | TSL 5 BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Pkhd1l1-201 | ENSMUST00000038336 | 12741 nt | TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr803-202 | ENSMUST00000204641 | 2385 nt | APPRIS P1 TSL 5 BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Btla-202 | ENSMUST00000102802 | 3251 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm4567-202 | ENSMUST00000190554 | 1581 nt | APPRIS P1 TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm10668-202 | ENSMUST00000191073 | 1581 nt | APPRIS P1 TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr1487-204 | ENSMUST00000216688 | 2038 nt | TSL 5 BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Vmn2r71-201 | ENSMUST00000172338 | 2568 nt | APPRIS P1 TSL 5 BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Adam5-201 | ENSMUST00000050300 | 2560 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.95 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm32693-201 | ENSMUST00000196538 | 2402 nt | TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm42909-201 | ENSMUST00000196982 | 3619 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm45540-201 | ENSMUST00000209271 | 3606 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Mir673-201 | ENSMUST00000102361 | 91 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Trbv15-201 | ENSMUST00000103273 | 370 nt | APPRIS P1 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Trbv30-201 | ENSMUST00000103282 | 332 nt | APPRIS ALT2 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22590-201 | ENSMUST00000104247 | 128 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm14877-201 | ENSMUST00000119803 | 478 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm12897-201 | ENSMUST00000120341 | 250 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm13569-201 | ENSMUST00000137221 | 574 nt | TSL 3 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm24909-201 | ENSMUST00000157290 | 280 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22890-201 | ENSMUST00000158642 | 144 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm17100-201 | ENSMUST00000168963 | 272 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Mir5136-201 | ENSMUST00000175573 | 76 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm20651-201 | ENSMUST00000177219 | 329 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Tmem167-ps2-201 | ENSMUST00000190251 | 214 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm5829-201 | ENSMUST00000191383 | 351 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm43250-201 | ENSMUST00000196536 | 273 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Igkv9-128-201 | ENSMUST00000196602 | 353 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm35857-201 | ENSMUST00000212739 | 178 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC155715.1-201 | ENSMUST00000213575 | 463 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC165157.3-201 | ENSMUST00000220815 | 103 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | mt-Ti-201 | ENSMUST00000082393 | 69 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm24042-201 | ENSMUST00000083114 | 103 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr681-201 | ENSMUST00000098157 | 948 nt | APPRIS P1 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Slco6c1-202 | ENSMUST00000189547 | 2315 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Thoc1-201 | ENSMUST00000025137 | 3855 nt | APPRIS P1 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Kctd4-201 | ENSMUST00000050120 | 3998 nt | APPRIS P1 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Macf1-203 | ENSMUST00000097897 | 23495 nt | APPRIS P2 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr577-203 | ENSMUST00000215237 | 3144 nt | APPRIS P1 TSL 5 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC117226.1-201 | ENSMUST00000221635 | 3737 nt | BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Adgre4-201 | ENSMUST00000025004 | 3491 nt | APPRIS P1 TSL 1 (best) BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Dock11-203 | ENSMUST00000115266 | 6047 nt | TSL 5 BASIC | 2.94 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr1369-ps1-204 | ENSMUST00000215207 | 3794 nt | APPRIS P1 TSL 5 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Olfr235-205 | ENSMUST00000214638 | 3459 nt | APPRIS P1 TSL 5 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm20557-201 | ENSMUST00000192871 | 2794 nt | TSL 1 (best) BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | n-R5s67-201 | ENSMUST00000104336 | 114 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm25316-201 | ENSMUST00000116826 | 118 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm9157-201 | ENSMUST00000117673 | 225 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm13076-201 | ENSMUST00000118041 | 204 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm12649-201 | ENSMUST00000137509 | 581 nt | TSL 3 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm23829-201 | ENSMUST00000157392 | 270 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm27592-201 | ENSMUST00000157729 | 126 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm16117-201 | ENSMUST00000160544 | 324 nt | TSL 5 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Vmn1r-ps83-201 | ENSMUST00000172677 | 705 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22174-201 | ENSMUST00000175050 | 125 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22692-201 | ENSMUST00000175055 | 125 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm27634-201 | ENSMUST00000175060 | 126 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22460-201 | ENSMUST00000175269 | 124 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm25535-201 | ENSMUST00000175364 | 125 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm24365-201 | ENSMUST00000175384 | 125 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm44310-201 | ENSMUST00000175424 | 126 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22639-201 | ENSMUST00000175591 | 125 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm24979-201 | ENSMUST00000178626 | 126 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm6660-201 | ENSMUST00000179149 | 468 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm24415-201 | ENSMUST00000180218 | 107 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm27869-201 | ENSMUST00000184327 | 122 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm27743-201 | ENSMUST00000185136 | 126 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm37923-201 | ENSMUST00000191624 | 161 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm37713-201 | ENSMUST00000191746 | 198 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm37698-201 | ENSMUST00000192605 | 463 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | CT030166.2-201 | ENSMUST00000222021 | 368 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm33424-201 | ENSMUST00000222317 | 257 nt | TSL 5 BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | AC151833.1-201 | ENSMUST00000227752 | 574 nt | BASIC | 2.93 | □□□□□ -1.94 | | |
| Hoxa3 | P02831 | Gm22507-201 | ENSMUST00000082773 | 160 nt | BASIC | 2.93 | □□□□□ -1.94 | | |