Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm32693-201ENSMUST00000196538 2402 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ShhQ62226 Olfr748-202ENSMUST00000213101 3632 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 Gm24096-201ENSMUST00000103905 110 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm14593-201ENSMUST00000119948 294 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm15244-201ENSMUST00000121122 130 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm14629-201ENSMUST00000122428 144 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm24481-201ENSMUST00000157210 102 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm23262-201ENSMUST00000158323 168 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm16232-201ENSMUST00000162856 167 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Gm26844-201ENSMUST00000181690 673 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ShhQ62226 Gm44399-201ENSMUST00000205043 226 ntBASIC3.04□□□□□ -1.92
ShhQ62226 4930431P19Rik-201ENSMUST00000207570 451 ntBASIC3.04□□□□□ -1.92
ShhQ62226 AC171203.1-201ENSMUST00000215363 456 ntTSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 AC130821.1-201ENSMUST00000221997 293 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Pip-201ENSMUST00000075351 588 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ShhQ62226 Gm43256-201ENSMUST00000199995 3091 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Olfr194-202ENSMUST00000213228 3668 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 Olfr1402-202ENSMUST00000199297 4051 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 AC122887.2-201ENSMUST00000219465 1603 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Olfr355-202ENSMUST00000213574 3610 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 Olfr346-202ENSMUST00000213258 4104 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ShhQ62226 Gm15101-201ENSMUST00000178818 1502 ntBASIC3.03□□□□□ -1.92
ShhQ62226 D930036K23Rik-201ENSMUST00000191894 3964 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Nlrp9a-202ENSMUST00000108387 3336 ntAPPRIS P4 TSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 CT030170.3-201ENSMUST00000221205 1815 ntBASIC3.03□□□□□ -1.92
ShhQ62226 4930533N22Rik-201ENSMUST00000206433 3509 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 Gm13457-201ENSMUST00000117885 267 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm13396-201ENSMUST00000120617 271 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm12071-201ENSMUST00000121968 469 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm23214-201ENSMUST00000122716 157 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Pfdn4-205ENSMUST00000136839 452 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 Gm26102-201ENSMUST00000157251 284 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm23716-201ENSMUST00000157348 144 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm23120-201ENSMUST00000157654 287 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm24959-201ENSMUST00000157924 146 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm24958-201ENSMUST00000158009 97 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm27510-201ENSMUST00000158214 64 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm23704-201ENSMUST00000158844 340 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm17187-201ENSMUST00000164622 410 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Vmn1r126-201ENSMUST00000168398 966 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ShhQ62226 4930518C09Rik-201ENSMUST00000172700 478 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 Gm24086-201ENSMUST00000175171 98 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm25198-201ENSMUST00000178574 110 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm27532-201ENSMUST00000183726 113 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm28058-201ENSMUST00000186421 264 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm29023-201ENSMUST00000190543 325 ntTSL 5 BASIC3.03□□□□□ -1.92
ShhQ62226 Gm31925-201ENSMUST00000193561 600 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 Gm9379-201ENSMUST00000196790 646 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm43067-201ENSMUST00000201580 445 ntTSL 3 BASIC3.03□□□□□ -1.92
ShhQ62226 Gm44012-201ENSMUST00000204154 424 ntTSL 3 BASIC3.03□□□□□ -1.92
ShhQ62226 Vmn2r-ps102-203ENSMUST00000222739 604 ntTSL 5 BASIC3.03□□□□□ -1.92
ShhQ62226 Defb9-201ENSMUST00000057076 310 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ShhQ62226 Snord35b-201ENSMUST00000082833 87 ntBASIC3.03□□□□□ -1.92
ShhQ62226 Gm10666-201ENSMUST00000098722 966 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ShhQ62226 Vmn1r114-201ENSMUST00000098737 966 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ShhQ62226 Vmn1r93-201ENSMUST00000098747 966 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ShhQ62226 Olfr785-201ENSMUST00000204402 2014 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
ShhQ62226 Vmn1r219-204ENSMUST00000228113 5639 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ShhQ62226 4932412D23Rik-203ENSMUST00000142270 4105 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
ShhQ62226 Tug1-201ENSMUST00000132077 6719 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 CT025577.1-201ENSMUST00000220862 2846 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Macc1-203ENSMUST00000221917 4272 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
ShhQ62226 Ogn-201ENSMUST00000021822 2566 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 Cypt15-201ENSMUST00000115114 519 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 Gm11862-201ENSMUST00000119678 659 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm13717-201ENSMUST00000119868 365 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm25325-201ENSMUST00000122559 86 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm15700-201ENSMUST00000139791 821 ntTSL 3 BASIC3.02□□□□□ -1.93
ShhQ62226 Gm27926-201ENSMUST00000157180 66 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm25486-201ENSMUST00000158726 63 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm26400-201ENSMUST00000175012 85 ntBASIC3.02□□□□□ -1.93
ShhQ62226 A930014E01Rik-201ENSMUST00000194572 330 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Olfr1304-ps1-201ENSMUST00000208032 189 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm45368-202ENSMUST00000210944 416 ntTSL 5 BASIC3.02□□□□□ -1.93
ShhQ62226 Gm46233-201ENSMUST00000217831 449 ntBASIC3.02□□□□□ -1.93
ShhQ62226 AC101984.1-201ENSMUST00000219639 402 ntBASIC3.02□□□□□ -1.93
ShhQ62226 AC133498.1-206ENSMUST00000223254 385 ntTSL 5 BASIC3.02□□□□□ -1.93
ShhQ62226 CT485612.4-201ENSMUST00000223405 250 ntBASIC3.02□□□□□ -1.93
ShhQ62226 AC154390.1-201ENSMUST00000225629 277 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Mucl2-201ENSMUST00000037685 639 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 Gm25698-201ENSMUST00000082897 107 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm26107-201ENSMUST00000083972 107 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm15088-201ENSMUST00000117973 1508 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Gm15098-201ENSMUST00000119036 1508 ntBASIC3.02□□□□□ -1.93
ShhQ62226 Ifi213-202ENSMUST00000150649 2748 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
ShhQ62226 Gm3234-202ENSMUST00000223301 3250 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 Mannr-201ENSMUST00000193549 1438 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ShhQ62226 Olfr1370-203ENSMUST00000215357 4285 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
ShhQ62226 Olfr1289-201ENSMUST00000120021 1643 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Gm14296-202ENSMUST00000108931 750 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm22195-201ENSMUST00000116861 108 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm13876-201ENSMUST00000118451 261 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm14551-201ENSMUST00000120802 256 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm25107-201ENSMUST00000122472 129 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm26275-201ENSMUST00000157101 268 ntBASIC3.01□□□□□ -1.93
ShhQ62226 2210418O10Rik-204ENSMUST00000166464 750 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm17036-201ENSMUST00000168187 254 ntTSL 3 BASIC3.01□□□□□ -1.93
ShhQ62226 Mir5624-201ENSMUST00000176635 61 ntBASIC3.01□□□□□ -1.93
ShhQ62226 Gm20688-201ENSMUST00000176779 512 ntTSL 5 BASIC3.01□□□□□ -1.93
ShhQ62226 Gm18486-201ENSMUST00000184040 298 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms