Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm24911-201ENSMUST00000157292 136 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm29184-201ENSMUST00000190038 334 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm44254-201ENSMUST00000204184 322 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Tnfrsf23-203ENSMUST00000208017 544 ntTSL 3 BASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 AC091260.1-201ENSMUST00000216112 229 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm24412-201ENSMUST00000083426 109 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm17061-201ENSMUST00000163167 499 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm22633-201ENSMUST00000179834 107 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 AC162934.3-201ENSMUST00000223015 841 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Mir151-201ENSMUST00000083678 68 ntBASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 BC100530-201ENSMUST00000096089 619 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 AU041133-201ENSMUST00000105314 1494 ntTSL 5 BASIC0.67□□□□□ -2.3
Ccdc88bQ4QRL3 Gm22757-201ENSMUST00000102279 96 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm9703-201ENSMUST00000119573 343 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm25621-201ENSMUST00000157223 114 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm15882-201ENSMUST00000161344 855 ntTSL 3 BASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm17771-201ENSMUST00000194477 1147 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm43096-201ENSMUST00000196173 421 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm43708-201ENSMUST00000198857 961 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 AC073947.3-201ENSMUST00000215576 766 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Gm3333-202ENSMUST00000221763 1044 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Olfr339-201ENSMUST00000071437 930 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Mir124a-3-201ENSMUST00000083520 68 ntBASIC0.66□□□□□ -2.3
Ccdc88bQ4QRL3 Mir710-201ENSMUST00000102088 110 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 Gm23036-201ENSMUST00000157885 99 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 Gm27013-201ENSMUST00000182441 1024 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 AC153506.2-201ENSMUST00000218051 257 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 Gm46194-201ENSMUST00000218136 320 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 AC137950.3-201ENSMUST00000228250 246 ntBASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 Sprr1b-201ENSMUST00000062160 830 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
Ccdc88bQ4QRL3 Rhox11-ps2-201ENSMUST00000117962 451 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Gm14761-201ENSMUST00000121363 262 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 n-R5s18-201ENSMUST00000122740 121 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Gm12694-201ENSMUST00000149367 748 ntTSL 3 BASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Gm17100-201ENSMUST00000168963 272 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Vmn1r-ps55-201ENSMUST00000174634 392 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Vmn2r-ps70-201ENSMUST00000174636 302 ntBASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Gm45830-201ENSMUST00000212945 344 ntTSL 5 BASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Sult2a8-201ENSMUST00000063509 2143 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Mndal-204ENSMUST00000188804 2026 ntAPPRIS P2 TSL 1 (best) BASIC0.64□□□□□ -2.31
Ccdc88bQ4QRL3 Gm22759-201ENSMUST00000102276 96 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Gm24915-201ENSMUST00000157288 78 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Gm26213-201ENSMUST00000158582 110 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Snord43-201ENSMUST00000199549 108 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 AL662807.1-201ENSMUST00000224183 126 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Gm23723-201ENSMUST00000082996 132 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Mir216a-201ENSMUST00000083605 72 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 Gm20541-201ENSMUST00000173035 1406 ntBASIC0.63□□□□□ -2.31
Ccdc88bQ4QRL3 AC160984.1-201ENSMUST00000225855 3154 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 Gm45265-201ENSMUST00000210852 2497 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 Gm6461-201ENSMUST00000120015 633 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 Gm9541-201ENSMUST00000188409 502 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 Gm21089-201ENSMUST00000215843 325 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 8030445P17Rik-201ENSMUST00000192614 2741 ntBASIC0.62□□□□□ -2.31
Ccdc88bQ4QRL3 Gm12137-201ENSMUST00000119565 346 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm9001-201ENSMUST00000121642 399 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm22675-201ENSMUST00000158430 104 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm3211-201ENSMUST00000172721 304 ntTSL 3 BASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm8502-201ENSMUST00000185708 901 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 9430083B18Rik-201ENSMUST00000191908 863 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm42476-201ENSMUST00000198860 554 ntTSL 3 BASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 AC136457.1-201ENSMUST00000224195 156 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm10945-201ENSMUST00000105596 60 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Sult2a-ps3-201ENSMUST00000117899 428 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Mir1949-201ENSMUST00000157434 141 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Gm25772-201ENSMUST00000158574 56 ntBASIC0.61□□□□□ -2.31
Ccdc88bQ4QRL3 Klrc2-204ENSMUST00000119533 717 ntAPPRIS P4 TSL 1 (best) BASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm6956-201ENSMUST00000134724 546 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm24903-201ENSMUST00000158131 126 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Mir3070a-201ENSMUST00000175468 89 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm29647-201ENSMUST00000188795 666 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 B230110G15Rik-201ENSMUST00000190868 772 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm28504-201ENSMUST00000190977 666 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm36966-201ENSMUST00000192217 413 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Mir191-201ENSMUST00000196210 74 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm43284-201ENSMUST00000200103 253 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 mt-Tl1-201ENSMUST00000082391 75 ntBASIC0.6□□□□□ -2.31
Ccdc88bQ4QRL3 Gm15029-201ENSMUST00000119742 199 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Gm22535-201ENSMUST00000158174 119 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Smim9-203ENSMUST00000165080 414 ntAPPRIS P1 TSL 3 BASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Gm26116-201ENSMUST00000175600 77 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Mir6399-201ENSMUST00000184050 84 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Obox4-ps39-201ENSMUST00000184306 628 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Gm37000-201ENSMUST00000193058 428 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Gm37399-201ENSMUST00000195224 416 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 C030038I04Rik-201ENSMUST00000207840 740 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 AC115047.1-201ENSMUST00000213795 322 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Mir32-201ENSMUST00000083610 70 ntBASIC0.59□□□□□ -2.32
Ccdc88bQ4QRL3 Ighv1-4-201ENSMUST00000103493 351 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 Gm2348-201ENSMUST00000108782 300 ntBASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 Traj60-201ENSMUST00000167781 54 ntBASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 Gm27640-201ENSMUST00000184580 147 ntBASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 AC093316.2-201ENSMUST00000220015 172 ntTSL 5 BASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 1700010L04Rik-201ENSMUST00000032872 330 ntTSL 5 BASIC0.57□□□□□ -2.32
Ccdc88bQ4QRL3 Gm43706-201ENSMUST00000198767 2652 ntBASIC0.56□□□□□ -2.32
Ccdc88bQ4QRL3 Gm12304-201ENSMUST00000120312 385 ntBASIC0.56□□□□□ -2.32
Ccdc88bQ4QRL3 Gm14884-201ENSMUST00000120456 196 ntBASIC0.56□□□□□ -2.32
Ccdc88bQ4QRL3 Gm14364-201ENSMUST00000129209 267 ntBASIC0.56□□□□□ -2.32
Ccdc88bQ4QRL3 Gm25669-201ENSMUST00000157699 112 ntBASIC0.56□□□□□ -2.32
Ccdc88bQ4QRL3 Gm27160-201ENSMUST00000184837 199 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms