Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm24795-201ENSMUST00000116737 121 ntBASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm25171-201ENSMUST00000116926 121 ntBASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm14651-201ENSMUST00000147192 442 ntBASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm12065-201ENSMUST00000149592 656 ntTSL 3 BASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Igkv17-134-201ENSMUST00000168310 348 ntBASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Scgb3a2-203ENSMUST00000189750 578 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm20837-202ENSMUST00000190558 844 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm43043-201ENSMUST00000196579 412 ntBASIC0.79□□□□□ -2.28
Ccdc88bQ4QRL3 Gm6664-201ENSMUST00000119138 468 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm11891-201ENSMUST00000121241 619 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm14979-201ENSMUST00000121561 1035 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm5709-201ENSMUST00000177879 1165 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm44071-201ENSMUST00000204180 448 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm40810-201ENSMUST00000219149 253 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 AC165293.1-201ENSMUST00000219669 329 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm9318-201ENSMUST00000222444 438 ntBASIC0.78□□□□□ -2.28
Ccdc88bQ4QRL3 Gm13541-201ENSMUST00000119519 283 ntBASIC0.77□□□□□ -2.29
Ccdc88bQ4QRL3 Mir6915-201ENSMUST00000198839 69 ntBASIC0.77□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44828-201ENSMUST00000203745 106 ntBASIC0.77□□□□□ -2.29
Ccdc88bQ4QRL3 Snora34-201ENSMUST00000083402 138 ntBASIC0.77□□□□□ -2.29
Ccdc88bQ4QRL3 Gm12636-201ENSMUST00000117395 624 ntBASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Gm11845-201ENSMUST00000117886 327 ntBASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Gm22074-201ENSMUST00000158595 113 ntBASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Gm3952-201ENSMUST00000195093 573 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Gm19140-201ENSMUST00000209790 421 ntBASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Olfr1086-201ENSMUST00000099878 933 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
Ccdc88bQ4QRL3 Gm45262-201ENSMUST00000209917 1463 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 n-R5s207-201ENSMUST00000122497 118 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Gm18354-201ENSMUST00000173515 1068 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Mir3089-201ENSMUST00000175350 84 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Gm28779-201ENSMUST00000189678 323 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Tmem69-201ENSMUST00000069674 974 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Olfr921-201ENSMUST00000071681 1181 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Tcp11x2-201ENSMUST00000078605 1776 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 CT030170.3-201ENSMUST00000221205 1815 ntBASIC0.75□□□□□ -2.29
Ccdc88bQ4QRL3 Sel1l2-201ENSMUST00000120133 579 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm15008-201ENSMUST00000147429 460 ntTSL 3 BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Vmn1r-ps8-201ENSMUST00000177200 838 ntBASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Trav7d-4-201ENSMUST00000178768 451 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm28688-201ENSMUST00000187301 268 ntBASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 6430573P05Rik-201ENSMUST00000192562 508 ntTSL 5 BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm38074-201ENSMUST00000193467 145 ntTSL 5 BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44465-201ENSMUST00000199536 114 ntBASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm43493-201ENSMUST00000199837 202 ntBASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44211-201ENSMUST00000204867 145 ntBASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm5127-201ENSMUST00000101296 1455 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Olfr913-201ENSMUST00000081095 2441 ntAPPRIS P1 TSL 3 BASIC0.74□□□□□ -2.29
Ccdc88bQ4QRL3 Gm14459-201ENSMUST00000115573 540 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Mir1967-201ENSMUST00000157789 82 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm22519-201ENSMUST00000158270 178 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm15562-201ENSMUST00000161397 426 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm28434-201ENSMUST00000187738 500 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm38323-201ENSMUST00000192450 210 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Olfr289-ps1-201ENSMUST00000192834 369 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44472-201ENSMUST00000204922 943 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44794-201ENSMUST00000206550 411 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Olfr928-ps1-201ENSMUST00000213313 237 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm7692-201ENSMUST00000213534 409 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 AC159709.1-201ENSMUST00000220445 349 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Mir107-201ENSMUST00000083660 87 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm44560-201ENSMUST00000207816 3115 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm37761-201ENSMUST00000194989 2098 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm23172-201ENSMUST00000157160 124 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm16289-201ENSMUST00000162079 183 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm25035-201ENSMUST00000175414 77 ntBASIC0.73□□□□□ -2.29
Ccdc88bQ4QRL3 Gm13672-201ENSMUST00000117554 459 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm23181-201ENSMUST00000158685 110 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm22646-201ENSMUST00000175130 115 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm25949-201ENSMUST00000175333 114 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm43286-201ENSMUST00000197420 424 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm25788-201ENSMUST00000082721 131 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm42755-201ENSMUST00000198533 1493 ntBASIC0.72□□□□□ -2.29
Ccdc88bQ4QRL3 Gm24385-201ENSMUST00000122694 350 ntBASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Vmn1r224-201ENSMUST00000170076 897 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Cysltr1-201ENSMUST00000064892 1059 ntAPPRIS P1 TSL 2 BASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Olfr1458-201ENSMUST00000076729 906 ntAPPRIS ALT2 BASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Gm23969-201ENSMUST00000083324 74 ntBASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Olfr183-203ENSMUST00000213465 2200 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Olfr183-205ENSMUST00000214916 2249 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
Ccdc88bQ4QRL3 Vmn2r-ps100-201ENSMUST00000221238 1702 ntBASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Vmn1r19-201ENSMUST00000089830 2255 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Gm23713-201ENSMUST00000157353 70 ntBASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Gm22615-201ENSMUST00000158102 70 ntBASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Gm36638-201ENSMUST00000193295 400 ntBASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Gm14442-201ENSMUST00000119690 1736 ntBASIC0.7□□□□□ -2.3
Ccdc88bQ4QRL3 Gm25378-201ENSMUST00000104333 129 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm14885-201ENSMUST00000117969 496 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm15382-201ENSMUST00000118011 537 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm12639-201ENSMUST00000121400 493 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm22957-201ENSMUST00000122511 123 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Mir466m-201ENSMUST00000175052 84 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm44482-201ENSMUST00000199232 103 ntBASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 CT010498.1-201ENSMUST00000225382 546 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
Ccdc88bQ4QRL3 Gm23339-201ENSMUST00000158962 139 ntBASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 4930486I03Rik-201ENSMUST00000161509 788 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 Gm42672-201ENSMUST00000197821 352 ntBASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 Igkv11-114-201ENSMUST00000200013 346 ntBASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 AC156952.1-201ENSMUST00000220361 793 ntBASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 Gm25853-201ENSMUST00000082793 132 ntBASIC0.68□□□□□ -2.3
Ccdc88bQ4QRL3 Gm25543-201ENSMUST00000122678 312 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 76,532 protein–RNA pairs in 172 ms