Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Stx5a-215ENSMUST00000176570 563 ntTSL 2 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm2497-201ENSMUST00000189539 601 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm44389-201ENSMUST00000203795 182 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm45430-201ENSMUST00000211276 260 ntTSL 5 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 AC154262.1-201ENSMUST00000225976 286 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 AC124104.1-201ENSMUST00000226279 417 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm22055-201ENSMUST00000083388 107 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm37899-201ENSMUST00000193116 8717 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Vmn1r83-202ENSMUST00000226701 2788 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Gm5724-201ENSMUST00000148411 2449 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Nlrp2-201ENSMUST00000045022 3404 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Ifi203-ps-201ENSMUST00000155076 2556 ntBASIC4.77□□□□□ -1.65
Rnf40Q3U319 Olfr1098-202ENSMUST00000111574 2885 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Zfp667-202ENSMUST00000108562 3498 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Olfr1028-201ENSMUST00000080698 3474 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
Rnf40Q3U319 Pds5b-203ENSMUST00000110486 2900 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Postn-203ENSMUST00000107985 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Zfp426-213ENSMUST00000169558 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Agtr2-201ENSMUST00000089188 3283 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Vmn1r42-202ENSMUST00000226436 4045 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm24283-201ENSMUST00000104233 107 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm22071-201ENSMUST00000116857 83 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm13887-201ENSMUST00000119009 344 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm12897-201ENSMUST00000120341 250 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Trappc13-205ENSMUST00000144060 3538 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm24295-201ENSMUST00000158298 131 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm17469-201ENSMUST00000177942 498 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm17693-201ENSMUST00000178004 498 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm17361-201ENSMUST00000178121 498 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm17522-201ENSMUST00000178144 498 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm21616-201ENSMUST00000178416 498 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm17584-201ENSMUST00000178471 498 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Mir6417-201ENSMUST00000183815 116 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm43676-201ENSMUST00000197532 540 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Olfr1319-ps1-201ENSMUST00000208550 274 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Rps17-201ENSMUST00000080813 494 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
Rnf40Q3U319 n-R5s204-201ENSMUST00000082972 119 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm25147-201ENSMUST00000083030 105 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 n-R5s46-201ENSMUST00000083960 116 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm7676-201ENSMUST00000084055 319 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Olfr901-203ENSMUST00000216644 2731 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Vmn2r47-201ENSMUST00000170131 2559 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 Gm42862-201ENSMUST00000197494 2621 ntBASIC4.76□□□□□ -1.65
Rnf40Q3U319 Cntn3-201ENSMUST00000032159 5183 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
Rnf40Q3U319 A730046J19Rik-201ENSMUST00000135687 4707 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm26135-201ENSMUST00000101993 72 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm12571-201ENSMUST00000118132 243 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm8840-201ENSMUST00000122454 386 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Tnfsf13os-202ENSMUST00000144033 578 ntTSL 5 BASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm25603-201ENSMUST00000158361 105 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm17161-201ENSMUST00000169187 524 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm25464-201ENSMUST00000175481 107 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Snord50b-201ENSMUST00000178497 72 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Mir6399-201ENSMUST00000184050 84 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm43712-201ENSMUST00000198020 291 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm44429-201ENSMUST00000203542 186 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 AC154374.1-201ENSMUST00000215351 351 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 AC156790.5-201ENSMUST00000227075 231 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm10064-201ENSMUST00000071235 399 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Gm23244-201ENSMUST00000083375 92 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Vmn2r7-202ENSMUST00000161972 3583 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
Rnf40Q3U319 AC154481.2-201ENSMUST00000222526 3175 ntBASIC4.75□□□□□ -1.65
Rnf40Q3U319 Fam135a-206ENSMUST00000187369 4976 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
Rnf40Q3U319 Vmn1r178-202ENSMUST00000226450 2880 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Rnf40Q3U319 Fscb-201ENSMUST00000059833 3361 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Cast-208ENSMUST00000223033 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm21034-201ENSMUST00000207390 2608 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Pign-201ENSMUST00000070699 6528 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm25177-201ENSMUST00000122634 117 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm25824-201ENSMUST00000157092 121 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm24440-201ENSMUST00000157236 63 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm24634-201ENSMUST00000158672 107 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm24512-201ENSMUST00000174963 65 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Mir6539-201ENSMUST00000183732 110 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Mir6986-201ENSMUST00000184483 58 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm43898-201ENSMUST00000204456 424 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm5175-202ENSMUST00000219699 529 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 AC165164.2-201ENSMUST00000220313 392 ntTSL 3 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 AC122834.1-201ENSMUST00000227182 425 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Snord21-201ENSMUST00000082519 94 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm24525-201ENSMUST00000082917 151 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Mir29b-2-201ENSMUST00000083478 81 ntBASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm2042-201ENSMUST00000110145 1894 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Vmn1r174-202ENSMUST00000228331 9058 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Klhl15-204ENSMUST00000113915 6241 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Olfr826-203ENSMUST00000216661 2858 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Vmn1r45-208ENSMUST00000228662 3309 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Rnf40Q3U319 Gm42843-201ENSMUST00000196328 3616 ntBASIC4.73□□□□□ -1.65
Rnf40Q3U319 Olfr986-204ENSMUST00000218134 3487 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Chl1-201ENSMUST00000066905 7562 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Amy1-201ENSMUST00000067980 1985 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Olfr959-202ENSMUST00000215194 4339 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Olfr1137-202ENSMUST00000214209 3073 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Vmn1r19-201ENSMUST00000089830 2255 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Igkv1-110-201ENSMUST00000103321 401 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
Rnf40Q3U319 Mir105-201ENSMUST00000104655 80 ntBASIC4.73□□□□□ -1.65
Rnf40Q3U319 Gm22105-201ENSMUST00000116734 116 ntBASIC4.73□□□□□ -1.65
Rnf40Q3U319 Gm15714-201ENSMUST00000117168 250 ntBASIC4.73□□□□□ -1.65
Rnf40Q3U319 Gm8145-201ENSMUST00000118220 745 ntBASIC4.73□□□□□ -1.65
Rnf40Q3U319 Gm3267-201ENSMUST00000118671 473 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms