Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm22091-201ENSMUST00000116908 127 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm2066-201ENSMUST00000118046 389 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm13901-201ENSMUST00000137252 468 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm24288-201ENSMUST00000157630 144 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm24959-201ENSMUST00000157924 146 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm15900-201ENSMUST00000161584 342 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Klra5-204ENSMUST00000169901 792 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm5935-202ENSMUST00000178986 639 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Snord116l14-201ENSMUST00000179875 94 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm29347-201ENSMUST00000186695 449 ntTSL 3 BASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm37228-201ENSMUST00000193574 331 ntTSL 5 BASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm45658-201ENSMUST00000209197 580 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm45590-201ENSMUST00000209715 262 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 AC073947.3-201ENSMUST00000215576 766 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm23850-201ENSMUST00000083830 169 ntBASIC2.49□□□□□ -2.01
Scn4aQ9ER60 Gm13153-201ENSMUST00000120969 637 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Rhox11-ps1-201ENSMUST00000121945 387 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm23206-201ENSMUST00000122720 184 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm23642-201ENSMUST00000157858 258 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm18358-201ENSMUST00000173179 1277 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm26701-201ENSMUST00000181571 234 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm37026-201ENSMUST00000191917 535 ntTSL 5 BASIC2.48□□□□□ -2.01
Scn4aQ9ER60 C030006N10Rik-201ENSMUST00000219077 517 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 AC134601.3-201ENSMUST00000221682 154 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm24948-201ENSMUST00000082866 207 ntBASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Olfr1487-204ENSMUST00000216688 2038 ntTSL 5 BASIC2.48□□□□□ -2.01
Scn4aQ9ER60 Gm42664-201ENSMUST00000199417 3239 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm25416-201ENSMUST00000104221 107 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Olfr379-ps1-201ENSMUST00000117349 934 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm13341-201ENSMUST00000120780 672 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm25945-201ENSMUST00000122484 135 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Rab7b-203ENSMUST00000129905 476 ntTSL 2 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Oosp2-202ENSMUST00000135994 453 ntAPPRIS ALT2 TSL 3 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm22766-201ENSMUST00000158372 99 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm8292-201ENSMUST00000162574 396 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm5277-201ENSMUST00000164923 556 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Vmn2r-ps84-201ENSMUST00000173377 897 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm22853-201ENSMUST00000174974 131 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm21726-201ENSMUST00000179654 392 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm11168-204ENSMUST00000179881 672 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Mir7232-201ENSMUST00000197929 74 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 AC122465.2-201ENSMUST00000221774 354 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 AC154484.1-201ENSMUST00000227311 771 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 AC165284.1-201ENSMUST00000228614 458 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Olfr1161-201ENSMUST00000054845 1012 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Spata45-201ENSMUST00000077889 432 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm23723-201ENSMUST00000082996 132 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Olfr893-201ENSMUST00000093867 942 ntAPPRIS P2 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm45872-201ENSMUST00000209804 1584 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Olfr1313-203ENSMUST00000216071 2599 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm25391-201ENSMUST00000157342 134 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm42857-201ENSMUST00000200823 339 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm35309-201ENSMUST00000208337 478 ntTSL 3 BASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Gm44657-201ENSMUST00000208568 450 ntBASIC2.47□□□□□ -2.01
Scn4aQ9ER60 Zfp640-202ENSMUST00000224116 1562 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm11845-201ENSMUST00000117886 327 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm14359-201ENSMUST00000118883 424 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm14360-201ENSMUST00000120670 393 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm6568-201ENSMUST00000122274 697 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm9498-201ENSMUST00000140849 291 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm22765-201ENSMUST00000158371 128 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm26177-201ENSMUST00000178683 107 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 AL772271.1-201ENSMUST00000196848 65 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm45049-201ENSMUST00000207586 591 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 CT030187.1-201ENSMUST00000220605 252 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 AC192616.3-201ENSMUST00000220797 1124 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 AC102291.2-201ENSMUST00000228083 367 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Tas2r131-201ENSMUST00000082085 1036 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
Scn4aQ9ER60 Gm22740-201ENSMUST00000083439 109 ntBASIC2.46□□□□□ -2.02
Scn4aQ9ER60 AC154511.1-201ENSMUST00000222578 1587 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm22560-201ENSMUST00000157332 120 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Vmn2r-ps80-201ENSMUST00000173697 914 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm18396-201ENSMUST00000177095 361 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm28560-201ENSMUST00000186091 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm28334-201ENSMUST00000186653 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 1700040F17Rik-201ENSMUST00000187158 817 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm28495-201ENSMUST00000188452 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm28232-201ENSMUST00000188683 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm28481-201ENSMUST00000189231 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm29059-201ENSMUST00000191534 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm37765-201ENSMUST00000192395 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm37237-201ENSMUST00000192893 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm36968-201ENSMUST00000193737 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm38290-201ENSMUST00000195238 315 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm44830-201ENSMUST00000207667 584 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Vmn2r-ps99-201ENSMUST00000221276 1203 ntTSL 5 BASIC2.45□□□□□ -2.02
Scn4aQ9ER60 AC116656.1-201ENSMUST00000227040 755 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Olfr1461-201ENSMUST00000053772 939 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm22978-201ENSMUST00000082607 160 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Vmn1r185-204ENSMUST00000227411 4928 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm14940-201ENSMUST00000119309 495 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm12512-201ENSMUST00000119620 217 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Mir6382-201ENSMUST00000184055 110 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm19193-201ENSMUST00000190263 590 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm43402-201ENSMUST00000197159 159 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm43171-201ENSMUST00000199882 291 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Gm3442-201ENSMUST00000216808 710 ntBASIC2.45□□□□□ -2.02
Scn4aQ9ER60 AC091764.3-201ENSMUST00000219646 300 ntTSL 5 BASIC2.45□□□□□ -2.02
Scn4aQ9ER60 Olfr1102-201ENSMUST00000055129 1063 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
Retrieved 100 of 76,532 protein–RNA pairs in 100 ms