Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24753-201ENSMUST00000178183 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25829-201ENSMUST00000178275 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22092-201ENSMUST00000178290 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24486-201ENSMUST00000178420 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23217-201ENSMUST00000178482 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26245-201ENSMUST00000178491 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22910-201ENSMUST00000178568 132 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23610-201ENSMUST00000178659 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23092-201ENSMUST00000178688 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25709-201ENSMUST00000178844 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25547-201ENSMUST00000178877 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25312-201ENSMUST00000178972 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24722-201ENSMUST00000179017 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22969-201ENSMUST00000179018 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25101-201ENSMUST00000179057 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26378-201ENSMUST00000179093 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24873-201ENSMUST00000179101 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23934-201ENSMUST00000179111 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22623-201ENSMUST00000179244 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25737-201ENSMUST00000179274 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22618-201ENSMUST00000179376 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24182-201ENSMUST00000179419 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24242-201ENSMUST00000179440 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24863-201ENSMUST00000179499 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25064-201ENSMUST00000179535 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26295-201ENSMUST00000179690 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23712-201ENSMUST00000179713 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22823-201ENSMUST00000179754 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22360-201ENSMUST00000179775 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24978-201ENSMUST00000179782 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24967-201ENSMUST00000179791 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25173-201ENSMUST00000179794 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24870-201ENSMUST00000179897 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22288-201ENSMUST00000179904 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22645-201ENSMUST00000180010 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24565-201ENSMUST00000180099 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23805-201ENSMUST00000180129 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23512-201ENSMUST00000180237 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25327-201ENSMUST00000180263 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26058-201ENSMUST00000180294 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22418-201ENSMUST00000180326 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Mir8090-201ENSMUST00000185078 136 ntBASIC3.09□□□□□ -1.91
ShhQ62226 1700063A18Rik-201ENSMUST00000190901 356 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
ShhQ62226 Gm43529-201ENSMUST00000199178 412 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Olfr210-ps1-201ENSMUST00000203138 905 ntBASIC3.09□□□□□ -1.91
ShhQ62226 CT030161.1-201ENSMUST00000218411 124 ntBASIC3.09□□□□□ -1.91
ShhQ62226 AC158631.1-201ENSMUST00000219202 138 ntBASIC3.09□□□□□ -1.91
ShhQ62226 2900042G08Rik-201ENSMUST00000221776 650 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23629-201ENSMUST00000082465 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23924-201ENSMUST00000082474 108 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22246-201ENSMUST00000082478 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22749-201ENSMUST00000082490 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22747-201ENSMUST00000082495 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22063-201ENSMUST00000082560 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26129-201ENSMUST00000082719 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23057-201ENSMUST00000082801 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26328-201ENSMUST00000082821 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26331-201ENSMUST00000082824 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24205-201ENSMUST00000082953 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25405-201ENSMUST00000082973 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22628-201ENSMUST00000082988 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23721-201ENSMUST00000083005 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26324-201ENSMUST00000083073 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24535-201ENSMUST00000083140 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26496-201ENSMUST00000083150 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26127-201ENSMUST00000083193 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24456-201ENSMUST00000083198 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24458-201ENSMUST00000083204 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24018-201ENSMUST00000083232 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25794-201ENSMUST00000083286 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25790-201ENSMUST00000083293 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22295-201ENSMUST00000083311 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25127-201ENSMUST00000083336 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25583-201ENSMUST00000083413 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25577-201ENSMUST00000083414 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24414-201ENSMUST00000083434 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24861-201ENSMUST00000083459 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24764-201ENSMUST00000083686 199 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24803-201ENSMUST00000083693 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23103-201ENSMUST00000083725 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22580-201ENSMUST00000083727 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24260-201ENSMUST00000083741 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23732-201ENSMUST00000083751 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22682-201ENSMUST00000083854 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25869-201ENSMUST00000083855 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24693-201ENSMUST00000083885 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26317-201ENSMUST00000083894 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25257-201ENSMUST00000083907 110 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22352-201ENSMUST00000083917 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24448-201ENSMUST00000083979 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22798-201ENSMUST00000083992 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm26427-201ENSMUST00000093648 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22886-201ENSMUST00000093714 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 BC100530-201ENSMUST00000096089 619 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ShhQ62226 Gm22170-201ENSMUST00000097247 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm38031-201ENSMUST00000191819 3015 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Samd9l-201ENSMUST00000120087 5330 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ShhQ62226 Gm42909-201ENSMUST00000196982 3619 ntBASIC3.09□□□□□ -1.92
ShhQ62226 Olfr1162-202ENSMUST00000183862 4800 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
ShhQ62226 Tlr3-205ENSMUST00000209772 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 76,532 protein–RNA pairs in 92.6 ms