Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm44520-201ENSMUST00000205447 802 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm44877-201ENSMUST00000206485 274 ntTSL 5 BASIC3.12□□□□□ -1.91
ShhQ62226 Gm44794-201ENSMUST00000206550 411 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm44858-201ENSMUST00000207360 154 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm44654-201ENSMUST00000208052 329 ntBASIC3.12□□□□□ -1.91
ShhQ62226 AC107808.1-201ENSMUST00000213260 386 ntTSL 3 BASIC3.12□□□□□ -1.91
ShhQ62226 AC140254.1-201ENSMUST00000220063 331 ntBASIC3.12□□□□□ -1.91
ShhQ62226 AC124772.1-201ENSMUST00000221325 151 ntBASIC3.12□□□□□ -1.91
ShhQ62226 AC125223.1-203ENSMUST00000225304 498 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm9818-201ENSMUST00000050900 255 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Rpl31-ps1-201ENSMUST00000085128 378 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Olfr665-204ENSMUST00000216971 3248 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
ShhQ62226 Vmn1r66-204ENSMUST00000228086 3013 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ShhQ62226 Dst-211ENSMUST00000183034 23201 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
ShhQ62226 Gm42801-201ENSMUST00000202562 2865 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm38286-201ENSMUST00000195128 3105 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm43032-201ENSMUST00000197967 3123 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm32014-201ENSMUST00000214779 5145 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ShhQ62226 Wnk3-205ENSMUST00000184392 5394 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
ShhQ62226 Gm43404-201ENSMUST00000200424 2534 ntBASIC3.11□□□□□ -1.91
ShhQ62226 2610300M13Rik-202ENSMUST00000203716 1787 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ShhQ62226 Themis-201ENSMUST00000056097 5082 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
ShhQ62226 Gm12025-201ENSMUST00000117768 144 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm15844-201ENSMUST00000118016 576 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Tpt1-ps1-201ENSMUST00000120257 436 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm14810-201ENSMUST00000121628 486 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm24936-201ENSMUST00000122598 247 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Rab7b-203ENSMUST00000129905 476 ntTSL 2 BASIC3.11□□□□□ -1.91
ShhQ62226 Gm13942-201ENSMUST00000136950 325 ntTSL 3 BASIC3.11□□□□□ -1.91
ShhQ62226 Gm22843-201ENSMUST00000157710 134 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm22435-201ENSMUST00000158552 128 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm22263-201ENSMUST00000180060 104 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm27520-201ENSMUST00000184872 81 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm37085-201ENSMUST00000193780 196 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm34073-201ENSMUST00000195736 212 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm25203-202ENSMUST00000200458 216 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm44256-201ENSMUST00000203304 335 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm45738-201ENSMUST00000203645 233 ntTSL 5 BASIC3.11□□□□□ -1.91
ShhQ62226 Gm18453-201ENSMUST00000208000 626 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm44966-201ENSMUST00000208096 157 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm45273-201ENSMUST00000211559 281 ntBASIC3.11□□□□□ -1.91
ShhQ62226 AC173115.1-201ENSMUST00000220835 211 ntBASIC3.11□□□□□ -1.91
ShhQ62226 1700030L22Rik-201ENSMUST00000221214 567 ntTSL 5 BASIC3.11□□□□□ -1.91
ShhQ62226 AC107757.3-201ENSMUST00000226312 535 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Gm25203-201ENSMUST00000082842 215 ntBASIC3.11□□□□□ -1.91
ShhQ62226 Mup1-201ENSMUST00000084548 776 ntAPPRIS ALT2 TSL 3 BASIC3.11□□□□□ -1.91
ShhQ62226 Zfp979-201ENSMUST00000037565 2558 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
ShhQ62226 Gm11228-201ENSMUST00000143796 2013 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ShhQ62226 Gm43300-201ENSMUST00000198540 2043 ntBASIC3.1□□□□□ -1.91
ShhQ62226 AC158921.1-201ENSMUST00000227861 3468 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm14518-201ENSMUST00000117351 542 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm13167-201ENSMUST00000118554 578 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm13711-201ENSMUST00000119708 453 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm22073-201ENSMUST00000122668 189 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC3.1□□□□□ -1.91
ShhQ62226 Gm16358-201ENSMUST00000146046 210 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm23557-201ENSMUST00000157820 138 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm23779-201ENSMUST00000157938 64 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm22328-201ENSMUST00000158074 112 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm22538-201ENSMUST00000158169 299 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm17062-201ENSMUST00000166987 461 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm29069-201ENSMUST00000185857 675 ntTSL 3 BASIC3.1□□□□□ -1.91
ShhQ62226 Gm37290-201ENSMUST00000195775 339 ntBASIC3.1□□□□□ -1.91
ShhQ62226 4930596I21Rik-201ENSMUST00000200494 461 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ShhQ62226 Gm44989-201ENSMUST00000204749 217 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm7422-201ENSMUST00000220115 640 ntBASIC3.1□□□□□ -1.91
ShhQ62226 AC154262.1-201ENSMUST00000225976 286 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Skint11-201ENSMUST00000079915 820 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ShhQ62226 mt-Co3-201ENSMUST00000082409 784 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
ShhQ62226 Gm23412-201ENSMUST00000083017 107 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Gm25937-201ENSMUST00000083912 107 ntBASIC3.1□□□□□ -1.91
ShhQ62226 Vmn1r79-203ENSMUST00000227530 5581 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
ShhQ62226 Slitrk6-201ENSMUST00000078386 4240 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
ShhQ62226 Gm37158-201ENSMUST00000191652 5704 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Olfr901-203ENSMUST00000216644 2731 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
ShhQ62226 Zfp273-203ENSMUST00000181391 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ShhQ62226 Olfr918-202ENSMUST00000215461 3783 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
ShhQ62226 Prl3c1-202ENSMUST00000110364 850 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
ShhQ62226 Gm14841-201ENSMUST00000121067 758 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm11363-201ENSMUST00000121672 548 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24596-201ENSMUST00000122504 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23184-201ENSMUST00000122594 131 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm6956-201ENSMUST00000134724 546 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm14684-201ENSMUST00000145722 123 ntTSL 5 BASIC3.09□□□□□ -1.91
ShhQ62226 Gm23956-201ENSMUST00000157211 119 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22225-201ENSMUST00000157358 278 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23671-201ENSMUST00000157472 103 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23137-201ENSMUST00000157559 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23592-201ENSMUST00000157859 117 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24584-201ENSMUST00000157972 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23775-201ENSMUST00000158991 249 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm20450-201ENSMUST00000173652 147 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24819-201ENSMUST00000175094 166 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25211-201ENSMUST00000177553 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm24540-201ENSMUST00000177627 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25256-201ENSMUST00000177746 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm22822-201ENSMUST00000177941 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Rnu6-201ENSMUST00000178023 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm23151-201ENSMUST00000178061 107 ntBASIC3.09□□□□□ -1.91
ShhQ62226 Gm25245-201ENSMUST00000178139 107 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 102 ms