Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm10784-201ENSMUST00000178715 238 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm21850-201ENSMUST00000179792 359 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm7497-201ENSMUST00000183064 1003 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm29167-201ENSMUST00000190024 377 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm37431-201ENSMUST00000195102 111 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm38670-201ENSMUST00000199248 77 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm2522-201ENSMUST00000204280 322 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm44784-201ENSMUST00000207396 460 ntTSL 5 BASIC4.85□□□□□ -1.63
Rnf40Q3U319 AC238676.3-201ENSMUST00000223042 154 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm25797-201ENSMUST00000082640 107 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Mir188-201ENSMUST00000083464 68 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Mir331-201ENSMUST00000083673 96 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Glra3-201ENSMUST00000000275 6508 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Wdr17-209ENSMUST00000150488 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Tenm1-203ENSMUST00000115059 12879 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Fam205c-202ENSMUST00000107978 1451 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm45235-201ENSMUST00000208016 4465 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Olfr513-202ENSMUST00000214670 2029 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Zfp273-203ENSMUST00000181391 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm45517-201ENSMUST00000209973 2468 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm42486-201ENSMUST00000200369 3486 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm37792-201ENSMUST00000195761 3413 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Postn-201ENSMUST00000073012 3189 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Vmn2r26-201ENSMUST00000032238 2568 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Themis-202ENSMUST00000060409 2278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Cyp3a25-201ENSMUST00000068317 2000 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Vmn1r43-203ENSMUST00000226741 12542 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Hbb-bh2-201ENSMUST00000106866 558 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm11032-201ENSMUST00000109941 102 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm12510-201ENSMUST00000152190 362 ntTSL 5 BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm25060-201ENSMUST00000157374 130 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm25906-201ENSMUST00000158489 126 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm25253-201ENSMUST00000179958 107 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm27887-201ENSMUST00000184367 102 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Rhox7-ps2-201ENSMUST00000197804 322 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 AC160134.1-201ENSMUST00000213450 551 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 H2al1o-201ENSMUST00000079952 509 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm22251-201ENSMUST00000083216 107 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm24453-201ENSMUST00000083346 76 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm24697-201ENSMUST00000083881 107 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm45804-201ENSMUST00000212137 3435 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Gm37777-201ENSMUST00000195546 3366 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Nlrp4d-201ENSMUST00000182420 2946 ntBASIC4.84□□□□□ -1.63
Rnf40Q3U319 Olfr38-202ENSMUST00000215796 2782 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
Rnf40Q3U319 Olfr497-202ENSMUST00000213521 2396 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.64
Rnf40Q3U319 Stk-ps2-201ENSMUST00000051224 4667 ntTSL 2 BASIC4.84□□□□□ -1.64
Rnf40Q3U319 BB287469-201ENSMUST00000110149 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm15314-201ENSMUST00000120740 1887 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm4027-201ENSMUST00000164838 1850 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Ralgapa1-211ENSMUST00000220367 7473 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Vmn1r172-201ENSMUST00000038694 9009 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Igkv2-109-201ENSMUST00000103322 374 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm23910-201ENSMUST00000104597 132 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm23652-201ENSMUST00000116752 107 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm14518-201ENSMUST00000117351 542 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm24894-201ENSMUST00000122744 118 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Mir6903-201ENSMUST00000183597 88 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Mir6383-201ENSMUST00000184545 116 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm29613-201ENSMUST00000185846 313 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm29604-201ENSMUST00000187176 163 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm28097-201ENSMUST00000187333 366 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm29544-201ENSMUST00000188860 313 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm28808-201ENSMUST00000190978 313 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Igkv15-101-201ENSMUST00000195917 299 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm43724-201ENSMUST00000197516 226 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm42927-201ENSMUST00000200624 3841 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 AC153512.4-201ENSMUST00000217783 426 ntTSL 3 BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm3829-201ENSMUST00000222362 619 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 AC124746.2-201ENSMUST00000226594 427 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Defb19-201ENSMUST00000053180 394 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm22683-201ENSMUST00000082854 137 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Vmn1r89-208ENSMUST00000228587 2061 ntAPPRIS P2 BASIC4.83□□□□□ -1.64
Rnf40Q3U319 4931408C20Rik-201ENSMUST00000097801 4318 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Kcnb2-201ENSMUST00000170146 14845 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Slfn8-201ENSMUST00000038141 4011 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Ank2-208ENSMUST00000182078 14305 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
Rnf40Q3U319 Gm43009-201ENSMUST00000199979 3566 ntBASIC4.83□□□□□ -1.64
Rnf40Q3U319 Olfr870-202ENSMUST00000215984 4091 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Olfr1331-202ENSMUST00000106360 3230 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Fam111a-204ENSMUST00000151307 3687 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm38106-201ENSMUST00000194107 2534 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Olfr1251-202ENSMUST00000214639 3071 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Mmp16-201ENSMUST00000029881 5011 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Snord64-201ENSMUST00000104003 67 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm25419-201ENSMUST00000104215 191 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm22676-201ENSMUST00000116972 129 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm6134-201ENSMUST00000117265 171 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm14402-201ENSMUST00000122217 508 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Mir7687-201ENSMUST00000184722 59 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 BX530055.1-201ENSMUST00000197285 122 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm19366-201ENSMUST00000206996 156 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 CT030182.2-201ENSMUST00000223569 620 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 AC158955.1-201ENSMUST00000227140 385 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Snord14d-201ENSMUST00000083424 86 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Mir186-201ENSMUST00000083497 71 ntBASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gm14399-201ENSMUST00000099029 192 ntTSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Ifi208-202ENSMUST00000169857 1767 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Rnf40Q3U319 AL589737.1-201ENSMUST00000221163 2763 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Atp1b4-201ENSMUST00000016471 4201 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
Rnf40Q3U319 Gprc6a-203ENSMUST00000219286 2574 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 76,532 protein–RNA pairs in 83 ms