Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm45173-201ENSMUST00000206819 305 ntBASIC2.57□□□□□ -2
Scn4aQ9ER60 CT009696.1-201ENSMUST00000215745 256 ntBASIC2.57□□□□□ -2
Scn4aQ9ER60 AL731706.1-202ENSMUST00000226652 180 ntAPPRIS P5 BASIC2.57□□□□□ -2
Scn4aQ9ER60 Gm20172-201ENSMUST00000193138 1551 ntBASIC2.57□□□□□ -2
Scn4aQ9ER60 Vmn2r72-201ENSMUST00000063425 2571 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
Scn4aQ9ER60 Olfr811-204ENSMUST00000217571 2399 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
Scn4aQ9ER60 Gm15113-201ENSMUST00000119280 836 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm14815-201ENSMUST00000120060 488 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm11785-201ENSMUST00000120165 601 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm14215-201ENSMUST00000120578 221 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm11384-201ENSMUST00000121376 303 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm23760-201ENSMUST00000158350 116 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm23704-201ENSMUST00000158844 340 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Mir3066-201ENSMUST00000175296 83 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm27676-201ENSMUST00000183669 61 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Mir7016-201ENSMUST00000184308 72 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm38353-201ENSMUST00000192351 617 ntTSL 3 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm44391-201ENSMUST00000198490 93 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm45048-201ENSMUST00000207058 429 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm6012-201ENSMUST00000210821 730 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 AC153968.2-201ENSMUST00000215579 1140 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 AC130823.2-201ENSMUST00000226169 290 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm25411-201ENSMUST00000083760 151 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Fau-ps1-201ENSMUST00000119675 252 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Slc7a12-202ENSMUST00000120484 1010 ntTSL 5 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm12238-201ENSMUST00000127764 124 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Tslrn1-201ENSMUST00000129479 747 ntTSL 3 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm24910-201ENSMUST00000157289 272 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Mir5129-201ENSMUST00000174938 78 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Obox4-ps2-201ENSMUST00000185088 442 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm21409-201ENSMUST00000186110 923 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm37987-201ENSMUST00000194999 825 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Olfr953-ps1-201ENSMUST00000214463 892 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Olfr929-ps1-201ENSMUST00000216338 585 ntBASIC2.56□□□□□ -2
Scn4aQ9ER60 Tslp-201ENSMUST00000025237 1133 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
Scn4aQ9ER60 Pdcd10-201ENSMUST00000029424 907 ntTSL 5 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Olfr305-201ENSMUST00000069236 960 ntAPPRIS P1 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Vmn1r229-201ENSMUST00000076759 921 ntAPPRIS P1 BASIC2.56□□□□□ -2
Scn4aQ9ER60 Gm7173-202ENSMUST00000114021 1083 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm8217-201ENSMUST00000119136 465 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm22818-201ENSMUST00000157446 104 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm11168-201ENSMUST00000177722 684 ntAPPRIS P5 TSL 5 BASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm11168-202ENSMUST00000178077 684 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm23145-201ENSMUST00000178912 79 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm25873-201ENSMUST00000180317 107 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Mir6240-201ENSMUST00000184281 117 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Ly96-202ENSMUST00000190366 429 ntTSL 1 (best) BASIC2.55□□□□□ -2
Scn4aQ9ER60 AC123656.2-201ENSMUST00000226726 227 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm5471-201ENSMUST00000072732 337 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Olfr896-ps1-203ENSMUST00000216276 2921 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm37661-201ENSMUST00000191863 1550 ntBASIC2.55□□□□□ -2
Scn4aQ9ER60 Gm4224-201ENSMUST00000211557 1594 ntTSL 1 (best) BASIC2.55□□□□□ -2
Scn4aQ9ER60 Vmn1r30-203ENSMUST00000227466 1798 ntAPPRIS P1 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm43960-201ENSMUST00000204249 5020 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm12584-201ENSMUST00000117109 1105 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm22929-201ENSMUST00000175517 107 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm23619-201ENSMUST00000178411 94 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm25474-201ENSMUST00000179052 94 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm22047-201ENSMUST00000179176 94 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm43729-201ENSMUST00000196949 499 ntTSL 3 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Mir6962-201ENSMUST00000199512 63 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 A930027P06Rik-201ENSMUST00000221298 2975 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Mgat4c-211ENSMUST00000163753 3862 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Olfr1448-203ENSMUST00000213713 4336 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Rex2-201ENSMUST00000075775 3993 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Mir582-201ENSMUST00000103758 81 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm22486-201ENSMUST00000116815 137 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Olfr1144-ps1-201ENSMUST00000118227 328 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm5937-201ENSMUST00000119715 643 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm22516-201ENSMUST00000158266 124 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm22076-201ENSMUST00000158601 84 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm15680-201ENSMUST00000161597 465 ntTSL 5 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm26779-201ENSMUST00000181101 551 ntTSL 2 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm37568-201ENSMUST00000191755 364 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Ranbp2-ps12-201ENSMUST00000197110 386 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm29817-201ENSMUST00000210098 172 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm46124-201ENSMUST00000215223 808 ntTSL 5 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm19540-201ENSMUST00000221843 810 ntBASIC2.54□□□□□ -2
Scn4aQ9ER60 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
Scn4aQ9ER60 Gm12825-201ENSMUST00000120249 563 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm14049-201ENSMUST00000121009 636 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm14694-201ENSMUST00000121856 282 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm22839-201ENSMUST00000158436 304 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Hmgb3-ps-201ENSMUST00000162465 601 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm17054-201ENSMUST00000169811 259 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm8739-201ENSMUST00000185962 181 ntTSL 5 BASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm29597-201ENSMUST00000188035 308 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm37743-201ENSMUST00000194645 376 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm43301-201ENSMUST00000198918 778 ntTSL 1 (best) BASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm39231-201ENSMUST00000209813 501 ntTSL 5 BASIC2.53□□□□□ -2
Scn4aQ9ER60 Olfr991-ps1-201ENSMUST00000215967 908 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm31849-201ENSMUST00000220306 375 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Spag11b-201ENSMUST00000039075 342 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
Scn4aQ9ER60 Olfr731-201ENSMUST00000059565 981 ntAPPRIS P1 BASIC2.53□□□□□ -2
Scn4aQ9ER60 Gm25404-201ENSMUST00000082970 107 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Mir320-201ENSMUST00000083594 82 ntBASIC2.53□□□□□ -2
Scn4aQ9ER60 Olfr921-203ENSMUST00000217114 4120 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
Scn4aQ9ER60 Rpl30-ps3-201ENSMUST00000117928 348 ntBASIC2.52□□□□□ -2.01
Scn4aQ9ER60 Gm12368-201ENSMUST00000122251 434 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 115.9 ms