Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm16038-201ENSMUST00000159317 193 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Rpl26-ps4-201ENSMUST00000170279 438 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm23793-201ENSMUST00000179396 117 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm27869-201ENSMUST00000184327 122 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm28418-201ENSMUST00000186179 423 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm7837-201ENSMUST00000190873 412 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm34073-201ENSMUST00000195736 212 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Igkv13-80-1-201ENSMUST00000197926 255 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm18453-201ENSMUST00000208000 626 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Mir208a-201ENSMUST00000083498 83 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Mir103-2-201ENSMUST00000083629 86 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 AF357428-201ENSMUST00000083815 69 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Gm10242-201ENSMUST00000090064 330 ntBASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Vmn1r77-204ENSMUST00000228213 8094 ntAPPRIS ALT2 BASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 Kctd4-201ENSMUST00000050120 3998 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
Ubfd1Q78JW9 2810403D21Rik-202ENSMUST00000124329 1660 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 C130023A14Rik-201ENSMUST00000193537 3087 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Olfr299-202ENSMUST00000217253 4479 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Ighv3-3-201ENSMUST00000103476 296 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Ighv1-54-201ENSMUST00000103525 377 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm25728-201ENSMUST00000104525 159 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm23184-201ENSMUST00000122594 131 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm22037-201ENSMUST00000157280 296 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm23671-201ENSMUST00000157472 103 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm22328-201ENSMUST00000158074 112 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm26402-201ENSMUST00000158499 113 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm15629-201ENSMUST00000161819 476 ntTSL 5 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm17062-201ENSMUST00000166987 461 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm20462-201ENSMUST00000172623 408 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm27921-201ENSMUST00000183968 108 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm37404-201ENSMUST00000195726 359 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Igkv15-97-201ENSMUST00000197637 339 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm43217-201ENSMUST00000199513 367 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm19252-201ENSMUST00000204705 305 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm18015-201ENSMUST00000214879 316 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 AC171203.1-201ENSMUST00000215363 456 ntTSL 5 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 AC142499.1-201ENSMUST00000220036 374 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm45815-201ENSMUST00000220241 146 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 AC173115.1-201ENSMUST00000220835 211 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm18921-201ENSMUST00000221798 366 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm10237-201ENSMUST00000078393 273 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm23970-201ENSMUST00000083319 107 ntBASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm3055-202ENSMUST00000218939 4067 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Zfp781-202ENSMUST00000219144 4067 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Btla-202ENSMUST00000102802 3251 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Olfr681-204ENSMUST00000215564 4487 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
Ubfd1Q78JW9 Gm14440-202ENSMUST00000109051 3382 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Ccr3-201ENSMUST00000039171 3272 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm3259-201ENSMUST00000101015 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Vmn1r71-207ENSMUST00000228248 5469 ntAPPRIS P2 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Igkv4-57-201ENSMUST00000103357 352 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm24118-201ENSMUST00000103972 126 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm14119-201ENSMUST00000119511 235 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm13692-201ENSMUST00000120774 371 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm13903-201ENSMUST00000120945 193 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm23557-201ENSMUST00000157820 138 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm22534-201ENSMUST00000158173 104 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm16232-201ENSMUST00000162856 167 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm20538-201ENSMUST00000166808 225 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Vmn1r126-201ENSMUST00000168398 966 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm23860-201ENSMUST00000179446 132 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Ighv2-8-201ENSMUST00000193935 262 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Obox4-ps25-201ENSMUST00000199090 210 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Igkv1-136-201ENSMUST00000200635 297 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm35931-201ENSMUST00000203931 448 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm9712-201ENSMUST00000210842 311 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 CT485612.4-201ENSMUST00000223405 250 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 AC125311.1-201ENSMUST00000226950 220 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm25698-201ENSMUST00000082897 107 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Gm10666-201ENSMUST00000098722 966 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Vmn1r114-201ENSMUST00000098737 966 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Vmn1r93-201ENSMUST00000098747 966 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 AW112010-201ENSMUST00000099676 770 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Nlrp9a-201ENSMUST00000071780 3125 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Nlrp9a-202ENSMUST00000108387 3336 ntAPPRIS P4 TSL 1 (best) BASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 D930036K23Rik-201ENSMUST00000191894 3964 ntBASIC3.26□□□□□ -1.89
Ubfd1Q78JW9 Npy6r-201ENSMUST00000042747 2567 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm18337-201ENSMUST00000219023 5762 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm23175-201ENSMUST00000104371 132 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm24376-201ENSMUST00000104399 127 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm11065-201ENSMUST00000111462 228 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm13122-201ENSMUST00000118380 453 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm23213-201ENSMUST00000122715 313 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm28305-201ENSMUST00000147249 365 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm27510-201ENSMUST00000158214 64 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Vmn2r-ps34-201ENSMUST00000177433 904 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Pnrc2-203ENSMUST00000180300 171 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm27640-201ENSMUST00000184580 147 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm29104-201ENSMUST00000186304 222 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm8242-202ENSMUST00000193056 475 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm9402-201ENSMUST00000196849 388 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gtpbp4-ps6-201ENSMUST00000198160 292 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm44468-201ENSMUST00000199516 105 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Olfr439-ps1-201ENSMUST00000204679 307 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm36368-201ENSMUST00000212026 461 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Olfr927-ps1-201ENSMUST00000216759 782 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 AC153887.2-201ENSMUST00000219160 3838 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 AC154521.1-201ENSMUST00000222635 330 ntBASIC3.25□□□□□ -1.89
Ubfd1Q78JW9 Gm40548-201ENSMUST00000223522 644 ntTSL 3 BASIC3.25□□□□□ -1.89
Retrieved 100 of 76,532 protein–RNA pairs in 154.3 ms