Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mir10a-201ENSMUST00000083585 110 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Defb41-201ENSMUST00000088463 467 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
ShhQ62226 Zfp493-201ENSMUST00000164936 3258 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
ShhQ62226 Gm42547-201ENSMUST00000201159 3798 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Olfr116-202ENSMUST00000216128 4477 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
ShhQ62226 Olfr1102-202ENSMUST00000214002 1806 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
ShhQ62226 Ccdc178-201ENSMUST00000025160 3335 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
ShhQ62226 Olfr138-203ENSMUST00000173841 1865 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
ShhQ62226 Tbx22-201ENSMUST00000068451 2947 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ShhQ62226 Tfpi-204ENSMUST00000111714 3614 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ShhQ62226 Gm44846-201ENSMUST00000207127 3243 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Vmn1r77-204ENSMUST00000228213 8094 ntAPPRIS ALT2 BASIC3.13□□□□□ -1.91
ShhQ62226 Trbv13-1-201ENSMUST00000103268 334 ntAPPRIS ALT2 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm25111-201ENSMUST00000116686 147 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm14811-201ENSMUST00000117070 117 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm11798-201ENSMUST00000119150 421 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm13692-201ENSMUST00000120774 371 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm24839-201ENSMUST00000122602 107 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm29247-202ENSMUST00000148542 571 ntTSL 2 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm13748-201ENSMUST00000149820 378 ntTSL 2 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm26414-201ENSMUST00000157674 269 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm23053-201ENSMUST00000175136 96 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm26501-201ENSMUST00000178307 107 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm26866-201ENSMUST00000180414 802 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm18551-201ENSMUST00000195594 642 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm19620-201ENSMUST00000195972 434 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm42468-201ENSMUST00000200360 703 ntTSL 3 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm44063-201ENSMUST00000203307 376 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Olfr505-ps1-201ENSMUST00000207626 976 ntBASIC3.13□□□□□ -1.91
ShhQ62226 AC138290.2-201ENSMUST00000218822 369 ntBASIC3.13□□□□□ -1.91
ShhQ62226 AC153864.2-201ENSMUST00000220424 292 ntBASIC3.13□□□□□ -1.91
ShhQ62226 CT572985.2-201ENSMUST00000220496 211 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Gm9370-201ENSMUST00000222787 609 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Olfr825-201ENSMUST00000076814 1159 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm23615-201ENSMUST00000082602 65 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Olfr561-201ENSMUST00000098217 1071 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
ShhQ62226 Olfr298-203ENSMUST00000216968 3451 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ShhQ62226 1700008H02Rik-201ENSMUST00000201220 1684 ntBASIC3.13□□□□□ -1.91
ShhQ62226 AC116557.1-201ENSMUST00000219494 1521 ntBASIC3.13□□□□□ -1.91
ShhQ62226 Olfr364-ps1-203ENSMUST00000217298 2894 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ShhQ62226 Slc25a36-201ENSMUST00000035024 4043 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ShhQ62226 Olfr732-202ENSMUST00000213701 3862 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ShhQ62226 Gm37661-201ENSMUST00000191863 1550 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm36944-201ENSMUST00000192257 2759 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Vmn1r56-201ENSMUST00000169556 1832 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ShhQ62226 Olfr1033-202ENSMUST00000213865 3664 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
ShhQ62226 Olfr109-203ENSMUST00000214938 5550 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
ShhQ62226 Olfr796-202ENSMUST00000214584 3554 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
ShhQ62226 AC124562.2-201ENSMUST00000223888 2313 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l9-201ENSMUST00000101891 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26504-201ENSMUST00000102033 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ShhQ62226 Gm16242-201ENSMUST00000117741 334 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm14940-201ENSMUST00000119309 495 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm13518-201ENSMUST00000120018 233 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm14883-201ENSMUST00000120179 157 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm22957-201ENSMUST00000122511 123 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm11917-201ENSMUST00000154813 373 ntTSL 2 BASIC3.12□□□□□ -1.91
ShhQ62226 Gm26215-201ENSMUST00000158584 139 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26502-201ENSMUST00000177732 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l13-201ENSMUST00000177737 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm25350-201ENSMUST00000177849 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l15-201ENSMUST00000177940 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm23446-201ENSMUST00000177977 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l4-201ENSMUST00000177982 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26201-201ENSMUST00000178047 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm24711-201ENSMUST00000178062 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm23402-201ENSMUST00000178130 107 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm24609-201ENSMUST00000178166 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm23265-201ENSMUST00000178321 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm22812-201ENSMUST00000178329 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l3-201ENSMUST00000178370 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26246-201ENSMUST00000178388 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm25155-201ENSMUST00000178450 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm24760-201ENSMUST00000178530 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm22285-201ENSMUST00000178576 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm22417-201ENSMUST00000178656 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l2-201ENSMUST00000178675 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26270-201ENSMUST00000178690 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l16-201ENSMUST00000178777 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm23313-201ENSMUST00000178931 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l17-201ENSMUST00000178936 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm23089-201ENSMUST00000178947 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l10-201ENSMUST00000179053 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm24153-201ENSMUST00000179280 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm25597-201ENSMUST00000179388 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l1-201ENSMUST00000179518 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm25816-201ENSMUST00000179764 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l8-201ENSMUST00000179889 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l7-201ENSMUST00000179895 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l5-201ENSMUST00000179927 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l6-201ENSMUST00000179955 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26188-201ENSMUST00000179963 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm26433-201ENSMUST00000180227 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Snord116l11-201ENSMUST00000180312 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm22128-201ENSMUST00000180346 94 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm27410-201ENSMUST00000183851 115 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm28030-201ENSMUST00000184987 138 ntBASIC3.12□□□□□ -1.91
ShhQ62226 B230207O21Rik-201ENSMUST00000198634 321 ntBASIC3.12□□□□□ -1.91
ShhQ62226 Gm44083-201ENSMUST00000203114 337 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms