Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Actl10-202ENSMUST00000226583 1501 ntBASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Gm18958-201ENSMUST00000174258 762 ntBASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim54Q9ERP3 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim54Q9ERP3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trim54Q9ERP3 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim54Q9ERP3 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim54Q9ERP3 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms