Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ddx56Q9D0R4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ddx56Q9D0R4 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Otx2os1-204ENSMUST00000227221 751 ntBASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ddx56Q9D0R4 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ddx56Q9D0R4 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Mir5122-201ENSMUST00000175004 89 ntBASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Il3ra-202ENSMUST00000223589 738 ntBASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms