Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm43353-201ENSMUST00000199224 1295 ntBASIC20.66■□□□□ 0.9
Brf1Q8CFK2 AC120002.2-201ENSMUST00000220205 773 ntBASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Brf1Q8CFK2 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Brf1Q8CFK2 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Brf1Q8CFK2 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.64■□□□□ 0.9
Brf1Q8CFK2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Brf1Q8CFK2 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Brf1Q8CFK2 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Gm4217-201ENSMUST00000182243 1002 ntBASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Gm27463-201ENSMUST00000183569 57 ntBASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Brf1Q8CFK2 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.62■□□□□ 0.89
Brf1Q8CFK2 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Brf1Q8CFK2 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Gm15565-201ENSMUST00000118890 427 ntBASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Gm11539-201ENSMUST00000119837 557 ntBASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Gm13436-201ENSMUST00000120418 567 ntBASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.61■□□□□ 0.89
Brf1Q8CFK2 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms