Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Nup88Q8CEC0 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.83
Nup88Q8CEC0 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nup88Q8CEC0 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nup88Q8CEC0 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nup88Q8CEC0 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.17■□□□□ 0.82
Nup88Q8CEC0 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nup88Q8CEC0 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Gm30025-201ENSMUST00000218555 728 ntBASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Nup88Q8CEC0 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Timm23-208ENSMUST00000226683 750 ntBASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup88Q8CEC0 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Nup88Q8CEC0 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 106.1 ms