Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Gm33142-201ENSMUST00000193913 867 ntBASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ubfd1Q78JW9 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ubfd1Q78JW9 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Gm7367-201ENSMUST00000057611 492 ntBASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ubfd1Q78JW9 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Gm3272-201ENSMUST00000181181 1229 ntBASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Gm10566-201ENSMUST00000086739 996 ntBASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ubfd1Q78JW9 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ubfd1Q78JW9 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms