Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Gm24589-201ENSMUST00000116692 94 ntBASIC20.16■□□□□ 0.82
Nup98Q6PFD9 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Nup98Q6PFD9 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Gm29707-201ENSMUST00000196325 491 ntBASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Nup98Q6PFD9 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.14■□□□□ 0.81
Nup98Q6PFD9 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.14■□□□□ 0.81
Nup98Q6PFD9 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Nup98Q6PFD9 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Nup98Q6PFD9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Nup98Q6PFD9 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.14■□□□□ 0.81
Nup98Q6PFD9 Gm10052-201ENSMUST00000168019 960 ntBASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gm27459-201ENSMUST00000184860 107 ntBASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gm7729-201ENSMUST00000050143 801 ntBASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Gm7461-201ENSMUST00000058918 827 ntBASIC20.13■□□□□ 0.81
Nup98Q6PFD9 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Nup98Q6PFD9 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 AC133598.3-202ENSMUST00000224219 531 ntBASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nup98Q6PFD9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nup98Q6PFD9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nup98Q6PFD9 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC20.09■□□□□ 0.81
Nup98Q6PFD9 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC20.09■□□□□ 0.81
Nup98Q6PFD9 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nup98Q6PFD9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms