Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Gm7791-201ENSMUST00000219066 539 ntBASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb4Q6P8W9 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb4Q6P8W9 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Hmgb4Q6P8W9 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb4Q6P8W9 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb4Q6P8W9 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb4Q6P8W9 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Gm16061-201ENSMUST00000122167 857 ntBASIC17.86■□□□□ 0.45
Hmgb4Q6P8W9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms