Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CtcfQ61164 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CtcfQ61164 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.84■□□□□ 0.61
CtcfQ61164 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CtcfQ61164 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
CtcfQ61164 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.84■□□□□ 0.61
CtcfQ61164 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.84■□□□□ 0.61
CtcfQ61164 Gm2559-201ENSMUST00000201323 363 ntBASIC18.84■□□□□ 0.61
CtcfQ61164 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.84■□□□□ 0.61
CtcfQ61164 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.84■□□□□ 0.61
CtcfQ61164 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CtcfQ61164 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CtcfQ61164 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Gm10602-201ENSMUST00000098239 609 ntBASIC18.83■□□□□ 0.6
CtcfQ61164 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CtcfQ61164 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CtcfQ61164 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CtcfQ61164 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CtcfQ61164 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.82■□□□□ 0.6
CtcfQ61164 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.82■□□□□ 0.6
CtcfQ61164 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CtcfQ61164 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Dio3-201ENSMUST00000097228 1449 ntBASIC18.82■□□□□ 0.6
CtcfQ61164 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CtcfQ61164 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.81■□□□□ 0.6
CtcfQ61164 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CtcfQ61164 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.81■□□□□ 0.6
CtcfQ61164 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.81■□□□□ 0.6
CtcfQ61164 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CtcfQ61164 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
CtcfQ61164 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CtcfQ61164 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.81■□□□□ 0.6
CtcfQ61164 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CtcfQ61164 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CtcfQ61164 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CtcfQ61164 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CtcfQ61164 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CtcfQ61164 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.8■□□□□ 0.6
CtcfQ61164 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.8■□□□□ 0.6
CtcfQ61164 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms