Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col27a1Q5QNQ9 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.54■□□□□ 0.24
Col27a1Q5QNQ9 Golph3-205ENSMUST00000228671 2842 ntBASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Gm13418-201ENSMUST00000119097 944 ntBASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col27a1Q5QNQ9 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Col27a1Q5QNQ9 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col27a1Q5QNQ9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Zfp264-201ENSMUST00000208656 1563 ntBASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Chchd1-203ENSMUST00000224633 557 ntBASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col27a1Q5QNQ9 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Gm12497-201ENSMUST00000138778 237 ntBASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 73.6 ms