Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.43■□□□□ 0.7
Usp28Q5I043 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Usp28Q5I043 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.43■□□□□ 0.7
Usp28Q5I043 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp28Q5I043 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.43■□□□□ 0.7
Usp28Q5I043 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.43■□□□□ 0.7
Usp28Q5I043 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp28Q5I043 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.42■□□□□ 0.7
Usp28Q5I043 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp28Q5I043 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Usp28Q5I043 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Usp28Q5I043 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp28Q5I043 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.41■□□□□ 0.7
Usp28Q5I043 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Usp28Q5I043 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp28Q5I043 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp28Q5I043 Gm10698-201ENSMUST00000182663 604 ntBASIC19.4■□□□□ 0.7
Usp28Q5I043 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.4■□□□□ 0.7
Usp28Q5I043 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Usp28Q5I043 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Usp28Q5I043 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp28Q5I043 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp28Q5I043 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp28Q5I043 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.39■□□□□ 0.7
Usp28Q5I043 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp28Q5I043 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp28Q5I043 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Usp28Q5I043 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp28Q5I043 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Usp28Q5I043 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.39■□□□□ 0.69
Usp28Q5I043 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Usp28Q5I043 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms