Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Limch1Q3UH68 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Limch1Q3UH68 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Limch1Q3UH68 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.13■□□□□ 0.81
Limch1Q3UH68 Gm11539-201ENSMUST00000119837 557 ntBASIC20.13■□□□□ 0.81
Limch1Q3UH68 Gm13436-201ENSMUST00000120418 567 ntBASIC20.13■□□□□ 0.81
Limch1Q3UH68 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Limch1Q3UH68 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Limch1Q3UH68 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.13■□□□□ 0.81
Limch1Q3UH68 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Limch1Q3UH68 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Gm12382-201ENSMUST00000122005 922 ntBASIC20.12■□□□□ 0.81
Limch1Q3UH68 Gm3375-201ENSMUST00000203929 796 ntBASIC20.12■□□□□ 0.81
Limch1Q3UH68 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Limch1Q3UH68 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Limch1Q3UH68 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.11■□□□□ 0.81
Limch1Q3UH68 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Gm4974-201ENSMUST00000209974 875 ntBASIC20.1■□□□□ 0.81
Limch1Q3UH68 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.1■□□□□ 0.81
Limch1Q3UH68 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Limch1Q3UH68 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Limch1Q3UH68 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms