Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.62■□□□□ 0.57
Lig3P97386 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lig3P97386 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
Lig3P97386 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Lig3P97386 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Lig3P97386 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.61■□□□□ 0.57
Lig3P97386 Gm17971-201ENSMUST00000190239 806 ntBASIC18.61■□□□□ 0.57
Lig3P97386 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.61■□□□□ 0.57
Lig3P97386 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.61■□□□□ 0.57
Lig3P97386 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lig3P97386 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lig3P97386 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.61■□□□□ 0.57
Lig3P97386 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Lig3P97386 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Lig3P97386 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.6■□□□□ 0.57
Lig3P97386 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.6■□□□□ 0.57
Lig3P97386 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.6■□□□□ 0.57
Lig3P97386 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Lig3P97386 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lig3P97386 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Lig3P97386 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Lig3P97386 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC18.59■□□□□ 0.57
Lig3P97386 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Mir5130-201ENSMUST00000175160 84 ntBASIC18.59■□□□□ 0.57
Lig3P97386 Gm27463-201ENSMUST00000183569 57 ntBASIC18.59■□□□□ 0.57
Lig3P97386 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Lig3P97386 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lig3P97386 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig3P97386 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig3P97386 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.58■□□□□ 0.57
Lig3P97386 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig3P97386 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lig3P97386 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.58■□□□□ 0.57
Lig3P97386 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Lig3P97386 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
Lig3P97386 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.58■□□□□ 0.56
Lig3P97386 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.58■□□□□ 0.56
Lig3P97386 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.58■□□□□ 0.56
Lig3P97386 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.58■□□□□ 0.56
Lig3P97386 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Lig3P97386 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Lig3P97386 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lig3P97386 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.57■□□□□ 0.56
Lig3P97386 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
Lig3P97386 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lig3P97386 Gm7284-201ENSMUST00000131667 944 ntBASIC18.57■□□□□ 0.56
Lig3P97386 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms