Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Ercc3P49135 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Ercc3P49135 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Ercc3P49135 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.29■□□□□ 0.84
Ercc3P49135 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ercc3P49135 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Ercc3P49135 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.28■□□□□ 0.84
Ercc3P49135 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Ercc3P49135 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.28■□□□□ 0.84
Ercc3P49135 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ercc3P49135 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Ercc3P49135 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.27■□□□□ 0.84
Ercc3P49135 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 AC154231.1-201ENSMUST00000220564 2175 ntBASIC20.27■□□□□ 0.84
Ercc3P49135 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.27■□□□□ 0.84
Ercc3P49135 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.27■□□□□ 0.84
Ercc3P49135 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ercc3P49135 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ercc3P49135 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Ercc3P49135 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Ercc3P49135 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Ercc3P49135 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Ercc3P49135 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ercc3P49135 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.26■□□□□ 0.83
Ercc3P49135 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Ercc3P49135 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ercc3P49135 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.25■□□□□ 0.83
Ercc3P49135 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ercc3P49135 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.25■□□□□ 0.83
Ercc3P49135 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.25■□□□□ 0.83
Ercc3P49135 Gm9731-201ENSMUST00000209480 747 ntBASIC20.25■□□□□ 0.83
Ercc3P49135 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ercc3P49135 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ercc3P49135 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ercc3P49135 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Ercc3P49135 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Ercc3P49135 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.24■□□□□ 0.83
Ercc3P49135 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.24■□□□□ 0.83
Ercc3P49135 Gm37025-201ENSMUST00000195159 829 ntBASIC20.24■□□□□ 0.83
Ercc3P49135 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ercc3P49135 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Ercc3P49135 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms