Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Clk4O35493 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Mir5122-201ENSMUST00000175004 89 ntBASIC16.42■□□□□ 0.22
Clk4O35493 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.42■□□□□ 0.22
Clk4O35493 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.42■□□□□ 0.22
Clk4O35493 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.42■□□□□ 0.22
Clk4O35493 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Clk4O35493 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.42■□□□□ 0.22
Clk4O35493 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk4O35493 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Clk4O35493 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.41■□□□□ 0.22
Clk4O35493 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.41■□□□□ 0.22
Clk4O35493 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Clk4O35493 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Clk4O35493 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Clk4O35493 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk4O35493 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.4■□□□□ 0.22
Clk4O35493 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Clk4O35493 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.4■□□□□ 0.22
Clk4O35493 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Clk4O35493 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.4■□□□□ 0.22
Clk4O35493 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.4■□□□□ 0.22
Clk4O35493 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Clk4O35493 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk4O35493 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
Clk4O35493 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Clk4O35493 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Clk4O35493 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Clk4O35493 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.39■□□□□ 0.21
Clk4O35493 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Clk4O35493 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Clk4O35493 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk4O35493 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.38■□□□□ 0.21
Clk4O35493 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Clk4O35493 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Clk4O35493 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.38■□□□□ 0.21
Clk4O35493 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
Clk4O35493 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.38■□□□□ 0.21
Clk4O35493 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.38■□□□□ 0.21
Clk4O35493 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms