Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm13667-201ENSMUST00000132332 617 ntTSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 A630050E04Rik-201ENSMUST00000151443 581 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 Gm22037-201ENSMUST00000157280 296 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm22516-201ENSMUST00000158266 124 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm23380-201ENSMUST00000158448 103 ntBASIC3.17□□□□□ -1.9
ShhQ62226 2310010J17Rik-201ENSMUST00000181189 490 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 1700015G11Rik-203ENSMUST00000185841 305 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Gm28932-201ENSMUST00000186300 357 ntTSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Ly96-202ENSMUST00000190366 429 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 Gm44161-201ENSMUST00000203532 253 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm19244-201ENSMUST00000204340 253 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Olfr278-ps1-201ENSMUST00000205676 238 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Olfr1285-201ENSMUST00000208523 903 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Defa-ps13-202ENSMUST00000212360 204 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 AC154515.2-201ENSMUST00000226093 406 ntBASIC3.17□□□□□ -1.9
ShhQ62226 2610044O15Rik8-201ENSMUST00000079272 264 ntTSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Gm22249-201ENSMUST00000082485 136 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Olfr1104-202ENSMUST00000214857 2693 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Olfr469-202ENSMUST00000213252 3164 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Gm42888-201ENSMUST00000202425 4361 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm6176-202ENSMUST00000207633 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 Cyp3a13-201ENSMUST00000031741 2956 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ShhQ62226 AC153365.1-201ENSMUST00000219016 2031 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ShhQ62226 Gm21833-201ENSMUST00000177665 1500 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
ShhQ62226 Gm24835-201ENSMUST00000116777 111 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm12805-201ENSMUST00000117305 1048 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm7327-201ENSMUST00000120925 652 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm11456-201ENSMUST00000121070 256 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm14761-201ENSMUST00000121363 262 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm14821-201ENSMUST00000121975 435 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm26020-201ENSMUST00000122729 183 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm17196-201ENSMUST00000164074 345 ntTSL 5 BASIC3.16□□□□□ -1.9
ShhQ62226 Mir5127-201ENSMUST00000175295 71 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm26092-201ENSMUST00000179798 97 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Mir669a-1-201ENSMUST00000180238 97 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm27374-201ENSMUST00000183660 81 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm7329-201ENSMUST00000185915 210 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm29064-201ENSMUST00000187014 813 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Tprkb-214ENSMUST00000202803 716 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ShhQ62226 Gm44446-201ENSMUST00000204864 255 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm44594-201ENSMUST00000208982 407 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Olfr1108-ps1-201ENSMUST00000216930 121 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm33654-201ENSMUST00000221704 215 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm21937-201ENSMUST00000222825 218 ntBASIC3.16□□□□□ -1.9
ShhQ62226 AC167669.1-201ENSMUST00000224932 384 ntBASIC3.16□□□□□ -1.9
ShhQ62226 AC126440.1-201ENSMUST00000227098 349 ntBASIC3.16□□□□□ -1.9
ShhQ62226 AC157572.3-201ENSMUST00000227288 303 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Snord68-201ENSMUST00000082516 86 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm23851-201ENSMUST00000083831 103 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Gm24817-201ENSMUST00000093672 105 ntBASIC3.16□□□□□ -1.9
ShhQ62226 Olfr1216-202ENSMUST00000216000 3595 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
ShhQ62226 Sacs-203ENSMUST00000119943 14991 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
ShhQ62226 AC153801.2-201ENSMUST00000219875 3372 ntBASIC3.15□□□□□ -1.9
ShhQ62226 Vmn2r-ps104-201ENSMUST00000099416 1671 ntTSL 5 BASIC3.15□□□□□ -1.9
ShhQ62226 Vmn2r-ps83-201ENSMUST00000173787 2368 ntBASIC3.15□□□□□ -1.9
ShhQ62226 Gm13431-201ENSMUST00000122948 476 ntTSL 2 BASIC3.15□□□□□ -1.91
ShhQ62226 Gm26149-201ENSMUST00000157432 108 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm23752-201ENSMUST00000157584 115 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm22945-201ENSMUST00000158557 157 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm23003-201ENSMUST00000179948 107 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Mir6905-201ENSMUST00000184228 70 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm29012-201ENSMUST00000187882 469 ntTSL 3 BASIC3.15□□□□□ -1.91
ShhQ62226 Gm28717-201ENSMUST00000189950 315 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm7837-201ENSMUST00000190873 412 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm8242-202ENSMUST00000193056 475 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm43393-201ENSMUST00000200147 194 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm43415-201ENSMUST00000201934 750 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm6842-201ENSMUST00000211361 390 ntBASIC3.15□□□□□ -1.91
ShhQ62226 AC102312.1-201ENSMUST00000217752 475 ntTSL 3 BASIC3.15□□□□□ -1.91
ShhQ62226 AC153887.2-201ENSMUST00000219160 3838 ntBASIC3.15□□□□□ -1.91
ShhQ62226 CT485608.1-201ENSMUST00000228759 389 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Olfr348-201ENSMUST00000056865 942 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
ShhQ62226 Cd52-201ENSMUST00000000696 514 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
ShhQ62226 Smcp-201ENSMUST00000098888 861 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
ShhQ62226 Olfr1129-202ENSMUST00000213315 2255 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
ShhQ62226 Olfr1446-203ENSMUST00000216805 2417 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
ShhQ62226 AC154386.1-201ENSMUST00000222753 2871 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Gm45540-201ENSMUST00000209271 3606 ntBASIC3.15□□□□□ -1.91
ShhQ62226 Olfr807-203ENSMUST00000217106 1788 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ShhQ62226 Olfr681-204ENSMUST00000215564 4487 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ShhQ62226 Gm45130-201ENSMUST00000207574 3388 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm14416-201ENSMUST00000118630 2308 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Trbj1-4-201ENSMUST00000103287 51 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
ShhQ62226 Mir1195-201ENSMUST00000116818 98 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm12722-201ENSMUST00000118507 493 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm25220-201ENSMUST00000157546 95 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm25902-201ENSMUST00000158493 318 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm7097-201ENSMUST00000161841 491 ntTSL 3 BASIC3.14□□□□□ -1.91
ShhQ62226 Gm8114-201ENSMUST00000172225 484 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm28408-201ENSMUST00000191557 463 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm37279-201ENSMUST00000194630 338 ntTSL 5 BASIC3.14□□□□□ -1.91
ShhQ62226 Gm42925-201ENSMUST00000197359 285 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm18982-201ENSMUST00000198118 529 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm42594-201ENSMUST00000199511 246 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm30146-201ENSMUST00000206564 605 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
ShhQ62226 Gm45815-201ENSMUST00000220241 146 ntBASIC3.14□□□□□ -1.91
ShhQ62226 AC154506.1-201ENSMUST00000225178 621 ntBASIC3.14□□□□□ -1.91
ShhQ62226 AC115291.1-201ENSMUST00000226803 258 ntBASIC3.14□□□□□ -1.91
ShhQ62226 Gm24948-201ENSMUST00000082866 207 ntBASIC3.14□□□□□ -1.91
ShhQ62226 AF357341-201ENSMUST00000083088 75 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 93 ms