Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm10800-201ENSMUST00000099683 660 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
ShhQ62226 Gm3956-201ENSMUST00000164882 2560 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Vmn2r-ps46-201ENSMUST00000172969 2556 ntBASIC3.2□□□□□ -1.9
ShhQ62226 P2ry10-202ENSMUST00000118666 2757 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ShhQ62226 AC161254.1-201ENSMUST00000220310 3842 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC133079.1-201ENSMUST00000220943 1881 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Adgre4-201ENSMUST00000025004 3491 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ShhQ62226 Prlr-205ENSMUST00000128921 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr1434-201ENSMUST00000207186 2714 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
ShhQ62226 Ighv15-2-201ENSMUST00000103497 351 ntAPPRIS ALT2 BASIC3.19□□□□□ -1.9
ShhQ62226 Trav14d-2-201ENSMUST00000103597 276 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ShhQ62226 Trav14n-2-201ENSMUST00000103623 276 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ShhQ62226 Gm14897-201ENSMUST00000118213 207 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm5762-201ENSMUST00000119204 258 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm14269-201ENSMUST00000120455 306 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm13153-201ENSMUST00000120969 637 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm24720-201ENSMUST00000157518 166 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm8580-201ENSMUST00000160295 464 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm3027-201ENSMUST00000167579 451 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm7953-201ENSMUST00000168278 469 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm17224-201ENSMUST00000171429 500 ntTSL 3 BASIC3.19□□□□□ -1.9
ShhQ62226 Mir3103-201ENSMUST00000175474 67 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Pcgf1-204ENSMUST00000176089 492 ntTSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Gm21842-201ENSMUST00000177552 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21626-201ENSMUST00000177791 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21562-201ENSMUST00000177888 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21539-201ENSMUST00000177925 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21827-201ENSMUST00000178247 423 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21599-201ENSMUST00000178249 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21914-201ENSMUST00000178452 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21723-201ENSMUST00000178692 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21916-201ENSMUST00000178771 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21801-201ENSMUST00000178865 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21633-201ENSMUST00000178941 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21821-201ENSMUST00000179646 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21588-201ENSMUST00000180074 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21780-201ENSMUST00000180128 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21572-201ENSMUST00000180134 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm21529-201ENSMUST00000180175 498 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Mir6916-201ENSMUST00000184514 63 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Trav14-2-202ENSMUST00000184874 276 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ShhQ62226 Gm28755-201ENSMUST00000185773 199 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm29370-202ENSMUST00000187476 499 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm42647-201ENSMUST00000195939 459 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Vmn1r-ps13-201ENSMUST00000204697 134 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm45119-201ENSMUST00000207612 199 ntBASIC3.19□□□□□ -1.9
ShhQ62226 AC129541.1-201ENSMUST00000226940 523 ntBASIC3.19□□□□□ -1.9
ShhQ62226 AC164100.1-201ENSMUST00000227214 508 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm25801-201ENSMUST00000082638 106 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Gm25475-201ENSMUST00000082825 180 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Snord15a-201ENSMUST00000083888 148 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Olfr1211-204ENSMUST00000215205 4220 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr1094-202ENSMUST00000217509 1693 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr65-203ENSMUST00000214300 2855 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Depdc1a-201ENSMUST00000029825 2920 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ShhQ62226 Gm9747-201ENSMUST00000023262 2822 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr199-202ENSMUST00000214186 2728 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr136-202ENSMUST00000208525 2534 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Olfr107-202ENSMUST00000215894 2512 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
ShhQ62226 Macf1-203ENSMUST00000097897 23495 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ShhQ62226 AC132237.1-201ENSMUST00000220950 4475 ntBASIC3.19□□□□□ -1.9
ShhQ62226 Crisp1-201ENSMUST00000026498 1416 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ShhQ62226 Prl7d1-203ENSMUST00000224026 3657 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
ShhQ62226 Olfr681-205ENSMUST00000216247 4729 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ShhQ62226 Vmn2r36-201ENSMUST00000170402 2561 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ShhQ62226 Zfp946-204ENSMUST00000167740 1572 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ShhQ62226 9330159F19Rik-201ENSMUST00000092627 5681 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ShhQ62226 Olfr389-201ENSMUST00000122224 3057 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
ShhQ62226 Gm15223-201ENSMUST00000120989 826 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm13409-201ENSMUST00000122072 546 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm25391-201ENSMUST00000157342 134 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm26214-201ENSMUST00000158581 107 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Pnrc2-203ENSMUST00000180300 171 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ShhQ62226 Gm27445-201ENSMUST00000184484 72 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm6947-201ENSMUST00000186254 78 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm29429-201ENSMUST00000187071 121 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Ighv2-8-201ENSMUST00000193935 262 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm43115-201ENSMUST00000196244 160 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm42621-201ENSMUST00000198114 275 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Rpl18a-ps3-201ENSMUST00000198938 171 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm43284-201ENSMUST00000200103 253 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Gm43932-201ENSMUST00000204499 52 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Olfr927-ps1-201ENSMUST00000216759 782 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC125020.2-201ENSMUST00000218894 348 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC144783.2-201ENSMUST00000219089 195 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC122905.2-201ENSMUST00000220325 269 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC163357.1-201ENSMUST00000220847 233 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC140477.1-201ENSMUST00000222354 246 ntBASIC3.18□□□□□ -1.9
ShhQ62226 AC158395.1-201ENSMUST00000227206 452 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Snora70-201ENSMUST00000083047 137 ntBASIC3.18□□□□□ -1.9
ShhQ62226 Mgat4c-212ENSMUST00000179929 4272 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
ShhQ62226 Gm15127-203ENSMUST00000112753 1950 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
ShhQ62226 Csn1s2b-202ENSMUST00000101057 1668 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 Gm3095-201ENSMUST00000164696 1568 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
ShhQ62226 Lrrd1-201ENSMUST00000044039 2951 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ShhQ62226 Defa-ps13-201ENSMUST00000120695 204 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm16021-201ENSMUST00000121176 219 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm6762-201ENSMUST00000121769 289 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm8840-201ENSMUST00000122454 386 ntBASIC3.17□□□□□ -1.9
ShhQ62226 Gm23213-201ENSMUST00000122715 313 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 76,532 protein–RNA pairs in 78.8 ms