Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22479-201ENSMUST00000122566 81 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm12729-201ENSMUST00000130088 624 ntTSL 3 BASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm11479-201ENSMUST00000134275 387 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm3104-201ENSMUST00000171004 473 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm25397-201ENSMUST00000176951 92 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm29192-201ENSMUST00000190942 377 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Igkv13-64-201ENSMUST00000198143 343 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm44468-201ENSMUST00000199516 105 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm44336-201ENSMUST00000203696 468 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm33981-201ENSMUST00000219918 660 ntTSL 5 BASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 AC129219.3-201ENSMUST00000223790 196 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 AC154515.2-201ENSMUST00000226093 406 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm24460-201ENSMUST00000082731 106 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm24950-201ENSMUST00000082768 191 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm23971-201ENSMUST00000083317 191 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm23849-201ENSMUST00000083833 191 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm26316-201ENSMUST00000083886 191 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Rnu2-10-201ENSMUST00000084010 191 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm10234-201ENSMUST00000089304 60 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Olfr183-201ENSMUST00000073320 2040 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 Gm37761-201ENSMUST00000194989 2098 ntBASIC4.12□□□□□ -1.75
Ddb1Q3U1J4 4932415D10Rik-202ENSMUST00000217661 15111 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 AC116557.1-201ENSMUST00000219494 1521 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Mga-204ENSMUST00000110774 13931 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Ssxb8-201ENSMUST00000101690 518 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm11785-201ENSMUST00000120165 601 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm13581-201ENSMUST00000120675 278 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm26278-201ENSMUST00000157098 132 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm16038-201ENSMUST00000159317 193 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm15914-201ENSMUST00000161922 309 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm21094-201ENSMUST00000177842 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm20837-201ENSMUST00000178446 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm21739-201ENSMUST00000178639 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm28891-201ENSMUST00000178751 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm24168-201ENSMUST00000178825 107 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm28490-201ENSMUST00000179076 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm21861-201ENSMUST00000179480 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm21256-201ENSMUST00000179672 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm20838-201ENSMUST00000179884 498 ntTSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm21679-201ENSMUST00000180373 498 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm28418-201ENSMUST00000186179 423 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm19261-201ENSMUST00000189628 539 ntTSL 2 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm43669-201ENSMUST00000198229 436 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Olfr542-ps1-201ENSMUST00000211706 831 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm5023-201ENSMUST00000217442 587 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 CT030161.1-201ENSMUST00000218411 124 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm19326-201ENSMUST00000219818 326 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm35190-201ENSMUST00000222335 526 ntTSL 3 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 AC162934.1-201ENSMUST00000222880 309 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 AC154276.2-201ENSMUST00000227707 309 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm4945-201ENSMUST00000075152 453 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Gm22061-201ENSMUST00000082557 107 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Olfr575-201ENSMUST00000084812 957 ntBASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Vmn2r50-201ENSMUST00000074943 2586 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Lztfl1-201ENSMUST00000026274 4070 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Ddb1Q3U1J4 Vmn2r75-201ENSMUST00000167830 2562 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm37494-202ENSMUST00000188038 16021 ntTSL 5 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Igkv3-7-201ENSMUST00000103399 299 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm26423-201ENSMUST00000104277 128 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm22021-201ENSMUST00000104353 107 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Mir467g-201ENSMUST00000116906 120 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm14001-201ENSMUST00000118847 247 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm14852-201ENSMUST00000120065 647 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm25270-201ENSMUST00000122606 138 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Cdrt4os2-201ENSMUST00000128675 494 ntTSL 2 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm25967-201ENSMUST00000157168 147 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm24720-201ENSMUST00000157518 166 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Mir5099-201ENSMUST00000175257 74 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm27999-201ENSMUST00000183539 193 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm27535-201ENSMUST00000183814 157 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm27608-201ENSMUST00000184822 162 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Trbv7-201ENSMUST00000193339 402 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm44989-201ENSMUST00000204749 217 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Olfr499-ps1-201ENSMUST00000208811 930 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm45730-201ENSMUST00000212560 395 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Olfr1114-ps1-201ENSMUST00000213896 456 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Olfr1108-ps1-201ENSMUST00000216930 121 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 AC153361.1-201ENSMUST00000219679 247 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm5175-202ENSMUST00000219699 529 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 AC118006.1-201ENSMUST00000224211 501 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Prl-203ENSMUST00000224228 888 ntAPPRIS ALT2 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm44821-201ENSMUST00000208212 2002 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Olfr1314-202ENSMUST00000207976 2976 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Gm43875-201ENSMUST00000203319 2475 ntBASIC4.1□□□□□ -1.75
Ddb1Q3U1J4 Themis-201ENSMUST00000056097 5082 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Tcrg-V5-201ENSMUST00000103556 293 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm25111-201ENSMUST00000116686 147 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Rpl30-ps10-201ENSMUST00000117119 347 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Rps15a-ps7-201ENSMUST00000117430 392 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Rpl30-ps3-201ENSMUST00000117928 348 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm12191-201ENSMUST00000118307 348 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm9703-201ENSMUST00000119573 343 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Rpl30-ps11-201ENSMUST00000119630 345 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Rpl30-ps1-201ENSMUST00000119767 348 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm13901-201ENSMUST00000137252 468 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm43439-201ENSMUST00000138710 322 ntTSL 3 BASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm24499-201ENSMUST00000158446 104 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm17196-201ENSMUST00000164074 345 ntTSL 5 BASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm22242-201ENSMUST00000175224 118 ntBASIC4.09□□□□□ -1.75
Ddb1Q3U1J4 Gm9022-202ENSMUST00000183285 483 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms