Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm44927-201ENSMUST00000207573 716 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm16351-202ENSMUST00000209660 337 ntTSL 5 BASIC3.23□□□□□ -1.89
ShhQ62226 Gm45380-201ENSMUST00000210465 315 ntBASIC3.23□□□□□ -1.89
ShhQ62226 AC159475.1-201ENSMUST00000216752 411 ntTSL 5 BASIC3.23□□□□□ -1.89
ShhQ62226 Gm25929-201ENSMUST00000082784 107 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Olfr1043-204ENSMUST00000216028 1824 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
ShhQ62226 Gm10324-201ENSMUST00000092528 1815 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
ShhQ62226 Dst-201ENSMUST00000097785 23251 ntAPPRIS P4 TSL 1 (best) BASIC3.23□□□□□ -1.89
ShhQ62226 Olfr1404-202ENSMUST00000216556 3305 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
ShhQ62226 Olfr183-201ENSMUST00000073320 2040 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
ShhQ62226 F8-201ENSMUST00000033539 9784 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
ShhQ62226 Gm15902-202ENSMUST00000219623 3477 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Vmn1r42-203ENSMUST00000227279 4138 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
ShhQ62226 Igkv4-57-201ENSMUST00000103357 352 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
ShhQ62226 Trav16n-201ENSMUST00000103633 353 ntAPPRIS ALT2 BASIC3.22□□□□□ -1.89
ShhQ62226 Gm13343-201ENSMUST00000116474 105 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Cyp4b1-ps1-201ENSMUST00000118753 315 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm14287-201ENSMUST00000121060 117 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm12801-201ENSMUST00000153228 263 ntTSL 3 BASIC3.22□□□□□ -1.89
ShhQ62226 Gm24666-201ENSMUST00000158937 167 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm21978-201ENSMUST00000179696 377 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Mir6335-201ENSMUST00000184081 98 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm27624-201ENSMUST00000185047 177 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm29183-201ENSMUST00000188600 790 ntTSL 5 BASIC3.22□□□□□ -1.89
ShhQ62226 Gm18384-201ENSMUST00000195974 808 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm19252-201ENSMUST00000204705 305 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm43154-210ENSMUST00000210190 1051 ntTSL 5 BASIC3.22□□□□□ -1.89
ShhQ62226 4930469B13Rik-202ENSMUST00000224808 348 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm24460-201ENSMUST00000082731 106 ntBASIC3.22□□□□□ -1.89
ShhQ62226 Gm25207-201ENSMUST00000093745 107 ntBASIC3.22□□□□□ -1.89
ShhQ62226 A230004M16Rik-202ENSMUST00000139508 4468 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
ShhQ62226 Vmn1r71-207ENSMUST00000228248 5469 ntAPPRIS P2 BASIC3.22□□□□□ -1.89
ShhQ62226 Gm19428-201ENSMUST00000220512 1995 ntBASIC3.21□□□□□ -1.89
ShhQ62226 Gm21032-201ENSMUST00000208108 2578 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm15975-201ENSMUST00000122385 1402 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm22750-201ENSMUST00000102076 103 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Mir687-201ENSMUST00000102166 89 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm24118-201ENSMUST00000103972 126 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Snord98-201ENSMUST00000116819 65 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm25539-201ENSMUST00000116886 122 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm12803-201ENSMUST00000118907 821 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Olfr1169-ps1-201ENSMUST00000121437 233 ntBASIC3.21□□□□□ -1.9
ShhQ62226 n-R5s216-201ENSMUST00000122755 112 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm22034-201ENSMUST00000157283 134 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm24504-201ENSMUST00000157679 100 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm24191-201ENSMUST00000157977 122 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm25373-201ENSMUST00000158156 115 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm22611-201ENSMUST00000158288 150 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Snord92-201ENSMUST00000175548 85 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm20698-201ENSMUST00000175657 233 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Ang-ps3-201ENSMUST00000177964 433 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm25360-201ENSMUST00000178786 191 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm26621-201ENSMUST00000180413 700 ntTSL 2 BASIC3.21□□□□□ -1.9
ShhQ62226 Gm28271-201ENSMUST00000191369 351 ntTSL 3 BASIC3.21□□□□□ -1.9
ShhQ62226 Gm37128-201ENSMUST00000192599 232 ntBASIC3.21□□□□□ -1.9
ShhQ62226 9530022L04Rik-201ENSMUST00000194340 310 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm37575-201ENSMUST00000195467 309 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm40040-202ENSMUST00000196337 305 ntTSL 3 BASIC3.21□□□□□ -1.9
ShhQ62226 Gm6135-201ENSMUST00000198726 372 ntTSL 2 BASIC3.21□□□□□ -1.9
ShhQ62226 Gm43955-201ENSMUST00000204332 142 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm44657-201ENSMUST00000208568 450 ntBASIC3.21□□□□□ -1.9
ShhQ62226 AC142499.1-201ENSMUST00000220036 374 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm18921-201ENSMUST00000221798 366 ntBASIC3.21□□□□□ -1.9
ShhQ62226 CT009713.6-201ENSMUST00000223615 294 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Defb39-201ENSMUST00000075504 252 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ShhQ62226 Olfr197-201ENSMUST00000080031 926 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm10212-201ENSMUST00000087884 324 ntBASIC3.21□□□□□ -1.9
ShhQ62226 Gm44601-201ENSMUST00000206678 2720 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ShhQ62226 Olfr1313-202ENSMUST00000213577 2588 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
ShhQ62226 Prlr-202ENSMUST00000124470 9900 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
ShhQ62226 Gm44434-201ENSMUST00000203918 3745 ntBASIC3.21□□□□□ -1.9
ShhQ62226 E430014B02Rik-201ENSMUST00000194215 3156 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Olfr138-202ENSMUST00000172843 1769 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
ShhQ62226 Gm8300-201ENSMUST00000110152 1873 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ShhQ62226 Pkhd1l1-202ENSMUST00000166957 12747 ntTSL 5 BASIC3.2□□□□□ -1.9
ShhQ62226 Pkhd1l1-201ENSMUST00000038336 12741 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ShhQ62226 Trav7n-4-201ENSMUST00000103609 341 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
ShhQ62226 Trav6-7-dv9-201ENSMUST00000103638 379 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
ShhQ62226 Gm26145-201ENSMUST00000104476 127 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm11854-201ENSMUST00000117839 446 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm13510-201ENSMUST00000118659 429 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm23791-201ENSMUST00000122553 293 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm16212-202ENSMUST00000143555 420 ntTSL 3 BASIC3.2□□□□□ -1.9
ShhQ62226 4930421P07Rik-201ENSMUST00000147322 399 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm23668-201ENSMUST00000157465 111 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm22216-201ENSMUST00000157557 114 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm22101-201ENSMUST00000157928 103 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm25284-201ENSMUST00000180345 141 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm28008-201ENSMUST00000184021 186 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm28155-201ENSMUST00000191066 151 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm38019-201ENSMUST00000195133 380 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm39147-201ENSMUST00000211376 465 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm45704-201ENSMUST00000212582 403 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Gm30674-201ENSMUST00000214523 392 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC132437.1-201ENSMUST00000218308 320 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC130222.1-201ENSMUST00000221198 256 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC154521.1-201ENSMUST00000222635 330 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC124746.2-201ENSMUST00000226594 427 ntBASIC3.2□□□□□ -1.9
ShhQ62226 AC117588.2-201ENSMUST00000228340 311 ntBASIC3.2□□□□□ -1.9
ShhQ62226 Rps15a-ps1-201ENSMUST00000071120 393 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 76,532 protein–RNA pairs in 102.1 ms