Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm12118-201ENSMUST00000119766 532 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm15807-201ENSMUST00000119880 1128 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm12478-201ENSMUST00000127709 353 ntTSL 5 BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Pfdn4-205ENSMUST00000136839 452 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25339-201ENSMUST00000157458 232 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23671-201ENSMUST00000157472 103 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22187-201ENSMUST00000157819 129 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm24857-201ENSMUST00000158061 310 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 H3f3aos-202ENSMUST00000159740 229 ntTSL 5 BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm16569-201ENSMUST00000160526 314 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Vmn1r-ps31-201ENSMUST00000174112 238 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord92-201ENSMUST00000175548 85 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Vmn2r-ps33-201ENSMUST00000175691 904 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22258-201ENSMUST00000177645 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26502-201ENSMUST00000177732 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l13-201ENSMUST00000177737 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25350-201ENSMUST00000177849 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l15-201ENSMUST00000177940 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23446-201ENSMUST00000177977 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l4-201ENSMUST00000177982 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26201-201ENSMUST00000178047 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm24711-201ENSMUST00000178062 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm24609-201ENSMUST00000178166 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23265-201ENSMUST00000178321 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22812-201ENSMUST00000178329 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l3-201ENSMUST00000178370 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26246-201ENSMUST00000178388 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22131-201ENSMUST00000178415 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25155-201ENSMUST00000178450 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Esp4-201ENSMUST00000178498 553 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm24760-201ENSMUST00000178530 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26032-201ENSMUST00000178535 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22285-201ENSMUST00000178576 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22417-201ENSMUST00000178656 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l2-201ENSMUST00000178675 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26270-201ENSMUST00000178690 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l16-201ENSMUST00000178777 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25210-201ENSMUST00000178813 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25157-201ENSMUST00000178914 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23313-201ENSMUST00000178931 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l17-201ENSMUST00000178936 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23089-201ENSMUST00000178947 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22046-201ENSMUST00000179027 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l10-201ENSMUST00000179053 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm24153-201ENSMUST00000179280 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25597-201ENSMUST00000179388 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26297-201ENSMUST00000179464 132 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l1-201ENSMUST00000179518 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22941-201ENSMUST00000179630 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25816-201ENSMUST00000179764 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l8-201ENSMUST00000179889 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l7-201ENSMUST00000179895 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l5-201ENSMUST00000179927 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l6-201ENSMUST00000179955 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26188-201ENSMUST00000179963 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm25471-201ENSMUST00000180126 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm26433-201ENSMUST00000180227 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord116l11-201ENSMUST00000180312 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm23862-201ENSMUST00000180342 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22128-201ENSMUST00000180346 94 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm21960-201ENSMUST00000181924 452 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 1700063A18Rik-201ENSMUST00000190901 356 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm43899-201ENSMUST00000203675 246 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm18423-201ENSMUST00000205144 1074 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm44718-201ENSMUST00000206886 359 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 5430401H09Rik-201ENSMUST00000218145 1076 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 CT030187.1-201ENSMUST00000220605 252 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 AC154527.5-201ENSMUST00000224448 496 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Mucl2-201ENSMUST00000037685 639 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm22974-201ENSMUST00000083301 103 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Snord7-201ENSMUST00000083781 97 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Vmn1r49-203ENSMUST00000226368 6276 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Gm15975-201ENSMUST00000122385 1402 ntBASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Glra2-201ENSMUST00000058787 3150 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
Ddb1Q3U1J4 Vmn1r185-213ENSMUST00000228676 5199 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Vmn1r81-205ENSMUST00000228764 13763 ntAPPRIS P2 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm14883-201ENSMUST00000120179 157 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm26477-201ENSMUST00000122617 323 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm13775-201ENSMUST00000153865 751 ntTSL 3 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm23231-201ENSMUST00000157299 104 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm25982-201ENSMUST00000157920 101 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm22532-201ENSMUST00000158822 140 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Ear-ps12-201ENSMUST00000161720 451 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm8338-201ENSMUST00000163928 363 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Tcrg-C3-201ENSMUST00000164407 519 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm17224-201ENSMUST00000171429 500 ntTSL 3 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Vmn2r-ps79-201ENSMUST00000174256 377 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm24819-201ENSMUST00000175094 166 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Bsph2-ps-201ENSMUST00000183795 241 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm8600-201ENSMUST00000186320 905 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm7858-201ENSMUST00000190177 622 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm38019-201ENSMUST00000195133 380 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm38088-201ENSMUST00000195829 241 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm45375-201ENSMUST00000210338 280 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm45772-201ENSMUST00000212961 240 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 CAAA01090811.1-201ENSMUST00000216828 277 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 n-R5s220-201ENSMUST00000082926 120 ntBASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm3636-202ENSMUST00000163850 1746 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Usp34-208ENSMUST00000180046 12200 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
Ddb1Q3U1J4 Gm14390-201ENSMUST00000117505 1695 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 76,532 protein–RNA pairs in 81.4 ms