Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mga-202ENSMUST00000079934 13304 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Olfr577-202ENSMUST00000214080 3282 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Vmn1r89-208ENSMUST00000228587 2061 ntAPPRIS P2 BASIC3.28□□□□□ -1.88
ShhQ62226 Olfr44-202ENSMUST00000215065 3578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm25315-201ENSMUST00000116823 121 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm16362-201ENSMUST00000135189 214 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm13901-201ENSMUST00000137252 468 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm11337-201ENSMUST00000144770 335 ntTSL 2 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm16349-201ENSMUST00000149990 394 ntTSL 3 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm22098-201ENSMUST00000157930 85 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm20534-201ENSMUST00000172957 172 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm21094-201ENSMUST00000177842 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm20837-201ENSMUST00000178446 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm21739-201ENSMUST00000178639 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm28891-201ENSMUST00000178751 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm28490-201ENSMUST00000179076 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm23793-201ENSMUST00000179396 117 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm21861-201ENSMUST00000179480 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm21256-201ENSMUST00000179672 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm20838-201ENSMUST00000179884 498 ntTSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm21679-201ENSMUST00000180373 498 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm28148-201ENSMUST00000186924 697 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm28700-201ENSMUST00000187614 579 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Rhoay-ps3-201ENSMUST00000187648 576 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm37404-201ENSMUST00000195726 359 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Olfr499-ps1-201ENSMUST00000208811 930 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Olfr542-ps1-201ENSMUST00000211706 831 ntBASIC3.28□□□□□ -1.88
ShhQ62226 AC121286.1-201ENSMUST00000218811 380 ntTSL 3 BASIC3.28□□□□□ -1.88
ShhQ62226 CT009718.4-201ENSMUST00000221881 109 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Snord42a-201ENSMUST00000082606 65 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm18360-201ENSMUST00000173327 1524 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Gm43881-201ENSMUST00000203051 2530 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Olfr1500-204ENSMUST00000215760 2305 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
ShhQ62226 Gm5362-201ENSMUST00000211968 3085 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Vmn1r51-207ENSMUST00000227766 4218 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
ShhQ62226 Olfr1318-202ENSMUST00000214063 3556 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
ShhQ62226 Mir743b-201ENSMUST00000104751 77 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm7164-201ENSMUST00000117503 450 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm11577-201ENSMUST00000118030 737 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm13873-201ENSMUST00000119208 427 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm15106-201ENSMUST00000119691 821 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm14980-201ENSMUST00000121247 736 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm12779-201ENSMUST00000121496 143 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm11471-201ENSMUST00000121824 198 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm14578-201ENSMUST00000122166 391 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm15718-201ENSMUST00000131085 311 ntTSL 3 BASIC3.27□□□□□ -1.89
ShhQ62226 Gm11479-201ENSMUST00000134275 387 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
ShhQ62226 Gm16155-201ENSMUST00000155180 338 ntTSL 3 BASIC3.27□□□□□ -1.89
ShhQ62226 Gm27592-201ENSMUST00000157729 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm25860-201ENSMUST00000158252 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm22085-201ENSMUST00000158344 110 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm24499-201ENSMUST00000158446 104 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm22257-201ENSMUST00000158687 301 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm16038-201ENSMUST00000159317 193 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Lce6a-202ENSMUST00000170676 485 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ShhQ62226 Gm22174-201ENSMUST00000175050 125 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm22692-201ENSMUST00000175055 125 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm27634-201ENSMUST00000175060 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm22460-201ENSMUST00000175269 124 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm24365-201ENSMUST00000175384 125 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm44310-201ENSMUST00000175424 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm22639-201ENSMUST00000175591 125 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm24979-201ENSMUST00000178626 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm24264-201ENSMUST00000179835 94 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm27743-201ENSMUST00000185136 126 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm28579-201ENSMUST00000186143 369 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm44393-201ENSMUST00000197418 138 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm43406-201ENSMUST00000200356 334 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Trav15n-3-201ENSMUST00000200498 168 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Mgst1-208ENSMUST00000204628 471 ntTSL 3 BASIC3.27□□□□□ -1.89
ShhQ62226 Olfr1481-ps1-201ENSMUST00000207312 134 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm6012-201ENSMUST00000210821 730 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm35857-201ENSMUST00000212739 178 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Olfr337-ps1-202ENSMUST00000213375 526 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Olfr125-202ENSMUST00000213857 3835 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
ShhQ62226 Gm5023-201ENSMUST00000217442 587 ntBASIC3.27□□□□□ -1.89
ShhQ62226 CT009604.2-201ENSMUST00000225531 377 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Spag11b-201ENSMUST00000039075 342 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ShhQ62226 Gm22304-201ENSMUST00000082688 129 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm24950-201ENSMUST00000082768 191 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm23971-201ENSMUST00000083317 191 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm25581-201ENSMUST00000083410 164 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm23849-201ENSMUST00000083833 191 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm26316-201ENSMUST00000083886 191 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Rnu2-10-201ENSMUST00000084010 191 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm37761-201ENSMUST00000194989 2098 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm42659-201ENSMUST00000196955 1754 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Vmn2r108-201ENSMUST00000167314 2568 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
ShhQ62226 Gm37655-201ENSMUST00000193968 4123 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Gm37642-201ENSMUST00000193166 1735 ntBASIC3.27□□□□□ -1.89
ShhQ62226 Nlrp9a-204ENSMUST00000122040 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
ShhQ62226 Olfr1404-203ENSMUST00000217374 3686 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
ShhQ62226 Macf1-206ENSMUST00000106224 23402 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
ShhQ62226 Kctd12b-201ENSMUST00000039424 4795 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ShhQ62226 Gm23422-201ENSMUST00000102000 107 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm9157-201ENSMUST00000117673 225 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm15167-201ENSMUST00000121997 187 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm23123-201ENSMUST00000157648 144 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm15629-201ENSMUST00000161819 476 ntTSL 5 BASIC3.26□□□□□ -1.89
ShhQ62226 Gm17072-201ENSMUST00000166673 658 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 76,532 protein–RNA pairs in 87.2 ms