Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11384-201ENSMUST00000121376 303 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Uqcrh-ps2-201ENSMUST00000121613 269 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm24635-201ENSMUST00000122712 128 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm13601-201ENSMUST00000142314 404 ntTSL 3 BASIC3.31□□□□□ -1.88
ShhQ62226 Gm5958-201ENSMUST00000147698 297 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm25967-201ENSMUST00000157168 147 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm24552-201ENSMUST00000158646 103 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm8338-201ENSMUST00000163928 363 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Mir3092-201ENSMUST00000174954 96 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm24811-201ENSMUST00000175313 100 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm27903-201ENSMUST00000175482 126 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm27013-201ENSMUST00000182441 1024 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm27245-201ENSMUST00000184385 376 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm27332-201ENSMUST00000184893 112 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm28418-201ENSMUST00000186179 423 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm29229-201ENSMUST00000188874 323 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm38356-201ENSMUST00000194313 408 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm42825-201ENSMUST00000198883 723 ntTSL 2 BASIC3.31□□□□□ -1.88
ShhQ62226 Olfr428-ps1-201ENSMUST00000201135 466 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm19326-201ENSMUST00000219818 326 ntBASIC3.31□□□□□ -1.88
ShhQ62226 AC154276.2-201ENSMUST00000227707 309 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Gm2710-201ENSMUST00000073196 603 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Olfr786-201ENSMUST00000076508 939 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
ShhQ62226 Gm22061-201ENSMUST00000082557 107 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Snora31-201ENSMUST00000083213 130 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Mir181a-2-201ENSMUST00000083489 76 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Mir133a-2-201ENSMUST00000083526 104 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Nlrp14-201ENSMUST00000084763 3272 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Strbp-201ENSMUST00000028279 16348 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ShhQ62226 Tex47-203ENSMUST00000160634 2881 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Gm43715-201ENSMUST00000196307 2715 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Olfr898-202ENSMUST00000216304 3979 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
ShhQ62226 Rab27b-203ENSMUST00000121693 6891 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Gm45389-201ENSMUST00000211163 3399 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Arhgef6-202ENSMUST00000114735 1614 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Olfr1116-202ENSMUST00000216364 9655 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
ShhQ62226 Gm24068-201ENSMUST00000104513 132 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Olfr1235-ps1-201ENSMUST00000117898 314 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm6274-201ENSMUST00000118173 797 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Psmb7-ps2-201ENSMUST00000118546 820 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Spink2-203ENSMUST00000121825 643 ntAPPRIS ALT2 TSL 3 BASIC3.3□□□□□ -1.88
ShhQ62226 Gm23867-201ENSMUST00000122649 274 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm12238-201ENSMUST00000127764 124 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm6265-201ENSMUST00000149263 231 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm22038-201ENSMUST00000157277 242 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Ear10-201ENSMUST00000159175 678 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Mir5099-201ENSMUST00000175257 74 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Obox4-ps34-201ENSMUST00000175879 520 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm23660-201ENSMUST00000178362 79 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm24088-201ENSMUST00000179100 79 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm29231-201ENSMUST00000179850 319 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Scgb2b29-ps-201ENSMUST00000187539 331 ntBASIC3.3□□□□□ -1.88
ShhQ62226 4930553J12Rik-202ENSMUST00000187823 851 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Rhoay-ps1-201ENSMUST00000191243 581 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm3143-202ENSMUST00000198364 675 ntTSL 2 BASIC3.3□□□□□ -1.88
ShhQ62226 Mir691-201ENSMUST00000199719 78 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Gm43651-201ENSMUST00000199796 439 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Olfr902-202ENSMUST00000213105 2113 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
ShhQ62226 Gm35190-201ENSMUST00000222335 526 ntTSL 3 BASIC3.3□□□□□ -1.88
ShhQ62226 Prl-203ENSMUST00000224228 888 ntAPPRIS ALT2 BASIC3.3□□□□□ -1.88
ShhQ62226 AC124729.1-201ENSMUST00000225327 976 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Sval1-201ENSMUST00000031898 615 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Olfr1459-201ENSMUST00000078299 1102 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
ShhQ62226 Mir21a-201ENSMUST00000083521 92 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Olfr575-201ENSMUST00000084812 957 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Vmn2r49-201ENSMUST00000108550 2559 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Vmn2r47-201ENSMUST00000170131 2559 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
ShhQ62226 Npy6r-201ENSMUST00000042747 2567 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Olfr1009-203ENSMUST00000216443 4047 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
ShhQ62226 Calcrl-202ENSMUST00000099944 3973 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Serpinb3a-202ENSMUST00000112717 1611 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ShhQ62226 Gm40020-201ENSMUST00000215677 1635 ntBASIC3.3□□□□□ -1.88
ShhQ62226 Ms4a14-201ENSMUST00000187467 4065 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
ShhQ62226 AC154634.4-201ENSMUST00000226077 2665 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Tcrg-V5-201ENSMUST00000103556 293 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
ShhQ62226 n-R5s31-201ENSMUST00000104162 110 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm13228-201ENSMUST00000118937 634 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm15026-201ENSMUST00000119219 458 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm13155-201ENSMUST00000119277 646 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm14119-201ENSMUST00000119511 235 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm8178-201ENSMUST00000121570 646 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm11351-201ENSMUST00000139335 583 ntTSL 2 BASIC3.29□□□□□ -1.88
ShhQ62226 Mir6383-201ENSMUST00000184545 116 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm27640-201ENSMUST00000184580 147 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm8600-201ENSMUST00000186320 905 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm9696-202ENSMUST00000191541 830 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm45730-201ENSMUST00000212560 395 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Olfr1114-ps1-201ENSMUST00000213896 456 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Etd-201ENSMUST00000074232 478 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
ShhQ62226 Gm23423-201ENSMUST00000082782 106 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Gm25411-201ENSMUST00000083760 151 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Olfr681-201ENSMUST00000098157 948 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
ShhQ62226 Mier1-201ENSMUST00000030247 4703 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
ShhQ62226 Fam111a-204ENSMUST00000151307 3687 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
ShhQ62226 Zfp260-202ENSMUST00000108200 3604 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ShhQ62226 AC121598.3-201ENSMUST00000227179 1643 ntBASIC3.29□□□□□ -1.88
ShhQ62226 Olfr347-202ENSMUST00000216882 3385 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
ShhQ62226 C130023A14Rik-201ENSMUST00000193537 3087 ntBASIC3.28□□□□□ -1.88
ShhQ62226 Olfr818-203ENSMUST00000215527 1849 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
ShhQ62226 Gm15319-201ENSMUST00000084046 2522 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 76,532 protein–RNA pairs in 131 ms