Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm8207-201ENSMUST00000171204 502 ntBASIC3.34□□□□□ -1.87
ShhQ62226 2310001H17Rik-201ENSMUST00000180379 521 ntTSL 2 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm9022-202ENSMUST00000183285 483 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm27999-201ENSMUST00000183539 193 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Bsph2-ps-201ENSMUST00000183795 241 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm29139-201ENSMUST00000185794 248 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
ShhQ62226 Gm29350-201ENSMUST00000189141 541 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm28069-201ENSMUST00000189926 214 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Mir7118-201ENSMUST00000197760 61 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm44336-201ENSMUST00000203696 468 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm17989-201ENSMUST00000211543 412 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm45860-201ENSMUST00000212700 334 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Olfr1035-ps1-202ENSMUST00000213364 288 ntTSL 5 BASIC3.34□□□□□ -1.87
ShhQ62226 Prl4a1-201ENSMUST00000021779 876 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
ShhQ62226 AC164567.2-201ENSMUST00000219363 445 ntBASIC3.34□□□□□ -1.87
ShhQ62226 CT030187.1-201ENSMUST00000220605 252 ntBASIC3.34□□□□□ -1.87
ShhQ62226 AC124549.2-201ENSMUST00000224243 222 ntBASIC3.34□□□□□ -1.87
ShhQ62226 AC117202.2-201ENSMUST00000226491 1101 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Rpl30-ps8-201ENSMUST00000076166 345 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Mir452-201ENSMUST00000093629 85 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm8074-201ENSMUST00000095071 252 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm10343-201ENSMUST00000096279 348 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm45809-201ENSMUST00000211661 3894 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Vmn1r80-209ENSMUST00000228578 11005 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
ShhQ62226 B3galt2-201ENSMUST00000038252 9288 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
ShhQ62226 Cfh-206ENSMUST00000192880 3746 ntTSL 5 BASIC3.34□□□□□ -1.88
ShhQ62226 Olfr792-202ENSMUST00000215436 2113 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
ShhQ62226 Olfr644-203ENSMUST00000213991 3506 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
ShhQ62226 Zfp945-205ENSMUST00000160457 6497 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
ShhQ62226 Vmn1r45-208ENSMUST00000228662 3309 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
ShhQ62226 Gm43047-201ENSMUST00000200089 3460 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Lrrc19-201ENSMUST00000053419 2780 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ShhQ62226 Pik3c2a-201ENSMUST00000170430 8044 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
ShhQ62226 Gm13650-201ENSMUST00000117729 433 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm14852-201ENSMUST00000120065 647 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm22036-201ENSMUST00000157279 215 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm22534-201ENSMUST00000158173 104 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm25519-201ENSMUST00000158392 127 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm7925-201ENSMUST00000166690 401 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm26141-201ENSMUST00000175299 126 ntBASIC3.33□□□□□ -1.88
ShhQ62226 9230113P08Rik-202ENSMUST00000176153 414 ntAPPRIS P5 TSL 5 BASIC3.33□□□□□ -1.88
ShhQ62226 Gm37313-201ENSMUST00000191673 290 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm37743-201ENSMUST00000194645 376 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Nras-ps2-201ENSMUST00000195269 178 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm43669-201ENSMUST00000198229 436 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm44468-201ENSMUST00000199516 105 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm44475-201ENSMUST00000204041 424 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm44887-201ENSMUST00000208980 178 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm7692-201ENSMUST00000213534 409 ntBASIC3.33□□□□□ -1.88
ShhQ62226 AC138401.1-201ENSMUST00000221533 116 ntBASIC3.33□□□□□ -1.88
ShhQ62226 CT010506.3-201ENSMUST00000223699 410 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm10242-201ENSMUST00000090064 330 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm37176-201ENSMUST00000193300 4051 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Gm43736-201ENSMUST00000196377 2281 ntBASIC3.33□□□□□ -1.88
ShhQ62226 Olfr597-202ENSMUST00000216456 2727 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
ShhQ62226 Dock11-203ENSMUST00000115266 6047 ntTSL 5 BASIC3.33□□□□□ -1.88
ShhQ62226 Gm13912-201ENSMUST00000156541 1860 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ShhQ62226 Gm18609-201ENSMUST00000203370 3601 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm43486-201ENSMUST00000196431 4339 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
ShhQ62226 Gm22496-201ENSMUST00000104493 88 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm23530-201ENSMUST00000104564 137 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm11322-201ENSMUST00000118095 435 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm11859-201ENSMUST00000118099 455 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm15760-201ENSMUST00000119553 283 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm12837-201ENSMUST00000120131 373 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm11785-201ENSMUST00000120165 601 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm12578-201ENSMUST00000121244 417 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Mir1898-201ENSMUST00000122643 83 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm12729-201ENSMUST00000130088 624 ntTSL 3 BASIC3.32□□□□□ -1.88
ShhQ62226 Gm23602-201ENSMUST00000157258 132 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm24409-201ENSMUST00000157881 152 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm25982-201ENSMUST00000157920 101 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm24727-201ENSMUST00000158231 144 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm25243-201ENSMUST00000174912 207 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm25175-201ENSMUST00000178712 79 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm8906-202ENSMUST00000179375 465 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
ShhQ62226 Gm28010-201ENSMUST00000179485 126 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm23862-201ENSMUST00000180342 94 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm28072-202ENSMUST00000190486 352 ntTSL 5 BASIC3.32□□□□□ -1.88
ShhQ62226 Gm37889-201ENSMUST00000194174 251 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm37587-202ENSMUST00000194935 475 ntTSL 3 BASIC3.32□□□□□ -1.88
ShhQ62226 Gm6510-201ENSMUST00000195916 574 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Gm44320-201ENSMUST00000199276 86 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Olfr192-203ENSMUST00000206214 1054 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
ShhQ62226 AC158803.1-201ENSMUST00000219495 316 ntBASIC3.32□□□□□ -1.88
ShhQ62226 AC167229.1-201ENSMUST00000220057 469 ntBASIC3.32□□□□□ -1.88
ShhQ62226 AC124581.4-201ENSMUST00000225874 463 ntBASIC3.32□□□□□ -1.88
ShhQ62226 Sprr2i-201ENSMUST00000047264 617 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ShhQ62226 Lyst-201ENSMUST00000110559 13181 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ShhQ62226 Vmn2r50-201ENSMUST00000074943 2586 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
ShhQ62226 A630033H20Rik-205ENSMUST00000167673 3044 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
ShhQ62226 Hyal6-201ENSMUST00000031690 3452 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Gm43016-201ENSMUST00000196628 3150 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Gm8978-201ENSMUST00000124230 2224 ntTSL 5 BASIC3.31□□□□□ -1.88
ShhQ62226 Olfr679-202ENSMUST00000214328 5184 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ShhQ62226 Ighv3-6-201ENSMUST00000103481 342 ntAPPRIS ALT2 BASIC3.31□□□□□ -1.88
ShhQ62226 Gm12902-201ENSMUST00000118389 322 ntBASIC3.31□□□□□ -1.88
ShhQ62226 Sel1l2-201ENSMUST00000120133 579 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ShhQ62226 Gm13443-201ENSMUST00000120770 555 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 76,532 protein–RNA pairs in 84.5 ms