Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm36960-201ENSMUST00000195491 2035 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Vmn2r75-201ENSMUST00000167830 2562 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
ShhQ62226 Serpina7-201ENSMUST00000033626 2330 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ShhQ62226 Gm10745-201ENSMUST00000192022 1523 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ShhQ62226 Gm42870-201ENSMUST00000199355 3470 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Trbv15-201ENSMUST00000103273 370 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
ShhQ62226 Gm12765-201ENSMUST00000117273 615 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm14823-201ENSMUST00000117698 238 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm11606-201ENSMUST00000120706 617 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm15142-201ENSMUST00000121013 856 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Serf1-202ENSMUST00000129014 543 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
ShhQ62226 4930511O05Rik-201ENSMUST00000155912 391 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ShhQ62226 Gm25283-201ENSMUST00000157272 77 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm3104-201ENSMUST00000171004 473 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Vmn1r-ps31-201ENSMUST00000174112 238 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm20399-201ENSMUST00000174652 132 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm24168-201ENSMUST00000178825 107 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Mir8106-201ENSMUST00000184520 139 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm29192-201ENSMUST00000190942 377 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm5829-201ENSMUST00000191383 351 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm36992-201ENSMUST00000195463 428 ntTSL 3 BASIC3.36□□□□□ -1.87
ShhQ62226 Igkv13-64-201ENSMUST00000198143 343 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm44324-201ENSMUST00000198517 135 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm44041-201ENSMUST00000203678 396 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Olfr914-201ENSMUST00000057755 951 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
ShhQ62226 Gm26446-201ENSMUST00000082455 103 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm25205-201ENSMUST00000082841 103 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm43883-201ENSMUST00000204002 3750 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Vmn2r67-201ENSMUST00000168730 2556 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
ShhQ62226 Olfr1226-202ENSMUST00000214709 5270 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
ShhQ62226 Olfr1454-203ENSMUST00000214695 4049 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
ShhQ62226 Plek-202ENSMUST00000102881 4101 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 AC155830.1-201ENSMUST00000220050 3836 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Pik3ca-201ENSMUST00000029201 8917 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Gm44120-201ENSMUST00000203022 3023 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Igkv9-124-201ENSMUST00000103312 287 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
ShhQ62226 Ighv3-5-201ENSMUST00000103479 299 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm5483-201ENSMUST00000114858 414 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Gm14622-201ENSMUST00000117117 468 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm14570-201ENSMUST00000119444 391 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm15147-201ENSMUST00000122263 483 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm26027-201ENSMUST00000122725 268 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm12958-201ENSMUST00000141242 674 ntTSL 3 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm15961-201ENSMUST00000156090 266 ntTSL 3 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm23169-201ENSMUST00000157157 112 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm22791-201ENSMUST00000157232 145 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm24244-201ENSMUST00000157317 130 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm26041-201ENSMUST00000158148 108 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Rpl30-ps2-201ENSMUST00000160070 291 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Clec9a-203ENSMUST00000164513 714 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Gm3646-201ENSMUST00000171319 352 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Gm3370-201ENSMUST00000171785 500 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Vmn2r-ps79-201ENSMUST00000174256 377 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm23725-201ENSMUST00000177876 107 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm26180-201ENSMUST00000179942 107 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm26622-201ENSMUST00000180520 298 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm27608-201ENSMUST00000184822 162 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm7858-201ENSMUST00000190177 622 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Vamp4-208ENSMUST00000194810 600 ntTSL 5 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm43238-201ENSMUST00000196463 359 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm43614-201ENSMUST00000197030 517 ntTSL 2 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm44084-201ENSMUST00000203947 409 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Gm45375-201ENSMUST00000210338 280 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Lilr4b-211ENSMUST00000219661 1143 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 AC154472.1-201ENSMUST00000222663 236 ntTSL 3 BASIC3.35□□□□□ -1.87
ShhQ62226 AC124400.1-201ENSMUST00000225779 193 ntBASIC3.35□□□□□ -1.87
ShhQ62226 Defb11-201ENSMUST00000051965 317 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Gm31592-201ENSMUST00000217529 3471 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Olfr789-201ENSMUST00000213236 4235 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm14390-201ENSMUST00000117505 1695 ntBASIC3.35□□□□□ -1.87
ShhQ62226 AI504432-201ENSMUST00000070085 5569 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
ShhQ62226 Olfr1243-202ENSMUST00000144885 3148 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
ShhQ62226 0610010F05Rik-201ENSMUST00000043356 4392 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
ShhQ62226 Gm44821-201ENSMUST00000208212 2002 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Ifi203-ps-201ENSMUST00000155076 2556 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Vmn2r78-201ENSMUST00000170835 2611 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
ShhQ62226 Olfr385-202ENSMUST00000215689 1671 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm42481-201ENSMUST00000196822 2178 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Postn-203ENSMUST00000107985 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
ShhQ62226 Olfr1255-202ENSMUST00000214508 2253 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm7853-201ENSMUST00000100708 478 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Mir759-201ENSMUST00000103254 98 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Igkv3-7-201ENSMUST00000103399 299 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm23697-201ENSMUST00000103897 110 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm22021-201ENSMUST00000104353 107 ntBASIC3.34□□□□□ -1.87
ShhQ62226 n-R5s202-201ENSMUST00000104517 114 ntBASIC3.34□□□□□ -1.87
ShhQ62226 n-R5s52-201ENSMUST00000104614 113 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Rpl30-ps10-201ENSMUST00000117119 347 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Rpl30-ps3-201ENSMUST00000117928 348 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm12191-201ENSMUST00000118307 348 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm13085-201ENSMUST00000118356 171 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm9703-201ENSMUST00000119573 343 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Rpl30-ps11-201ENSMUST00000119630 345 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Rpl30-ps1-201ENSMUST00000119767 348 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gm16005-201ENSMUST00000120515 269 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Cdrt4os2-201ENSMUST00000128675 494 ntTSL 2 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm13853-201ENSMUST00000155496 557 ntTSL 3 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm11640-201ENSMUST00000155987 272 ntTSL 3 BASIC3.34□□□□□ -1.87
ShhQ62226 Gm26278-201ENSMUST00000157098 132 ntBASIC3.34□□□□□ -1.87
ShhQ62226 Gt(ROSA)26Sor-204ENSMUST00000167415 551 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 95.4 ms