Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Trav12d-2-201ENSMUST00000103593 341 ntAPPRIS ALT2 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Trav12n-2-201ENSMUST00000103619 341 ntAPPRIS ALT2 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm22939-201ENSMUST00000103958 131 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Tpt1-ps1-201ENSMUST00000120257 436 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm11582-201ENSMUST00000121041 236 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Ssxb6-201ENSMUST00000138642 518 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm22322-201ENSMUST00000157151 111 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm23592-201ENSMUST00000157859 117 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Vmn2r-ps55-201ENSMUST00000173834 240 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm18520-201ENSMUST00000174783 658 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Snord116l14-201ENSMUST00000179875 94 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm23003-201ENSMUST00000179948 107 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm26866-201ENSMUST00000180414 802 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm26779-201ENSMUST00000181101 551 ntTSL 2 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm27532-201ENSMUST00000183726 113 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm44391-201ENSMUST00000198490 93 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm43976-201ENSMUST00000203637 235 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm44687-201ENSMUST00000204975 235 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm44208-201ENSMUST00000205199 421 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm34838-201ENSMUST00000209231 958 ntTSL 5 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm23932-201ENSMUST00000082914 107 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm26263-201ENSMUST00000083281 164 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Epyc-201ENSMUST00000020094 1723 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Olfr715-202ENSMUST00000214919 5114 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm37498-201ENSMUST00000193524 4002 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Serpinb3a-202ENSMUST00000112717 1611 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 4930467E23Rik-201ENSMUST00000098909 2514 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Gm42993-201ENSMUST00000196856 7325 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Olfr913-201ENSMUST00000081095 2441 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Olfr769-203ENSMUST00000216906 4325 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Dst-203ENSMUST00000115104 23279 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r66-204ENSMUST00000228086 3013 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm42770-201ENSMUST00000199657 4155 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Nebl-202ENSMUST00000124270 8079 ntTSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 9430025C20Rik-201ENSMUST00000068663 2115 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Olfr112-205ENSMUST00000213274 3558 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Traj24-201ENSMUST00000103717 63 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm13314-201ENSMUST00000118742 335 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm14638-201ENSMUST00000121338 216 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm14694-201ENSMUST00000121856 282 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm23068-201ENSMUST00000158239 293 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm23257-201ENSMUST00000158322 132 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm24546-201ENSMUST00000158652 102 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Tshb-202ENSMUST00000170856 552 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Mir3965-201ENSMUST00000175570 69 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm21827-201ENSMUST00000178247 423 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Trav7d-4-201ENSMUST00000178768 451 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Trav7-4-201ENSMUST00000181728 451 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gtpbp4-ps4-201ENSMUST00000184813 258 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm28399-201ENSMUST00000186221 318 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm28959-201ENSMUST00000186713 551 ntTSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm28572-201ENSMUST00000187444 318 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm43624-201ENSMUST00000197368 180 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm18540-201ENSMUST00000204025 526 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 AC172751.1-201ENSMUST00000226887 440 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 AC161572.1-201ENSMUST00000227486 640 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Olfr305-201ENSMUST00000069236 960 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Ugp2-202ENSMUST00000102875 2683 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm37661-201ENSMUST00000191863 1550 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r45-203ENSMUST00000227122 2861 ntBASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Olfr810-203ENSMUST00000214878 4709 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r74-202ENSMUST00000228471 6608 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Olfr652-202ENSMUST00000215410 4672 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Ddb1Q3U1J4 Gm10563-201ENSMUST00000115821 237 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm14355-201ENSMUST00000117352 264 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm15142-201ENSMUST00000121013 856 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm14333-201ENSMUST00000130484 264 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm14254-201ENSMUST00000136371 296 ntTSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm24787-201ENSMUST00000157380 123 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm22722-201ENSMUST00000157467 132 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm24958-201ENSMUST00000158009 97 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm22833-201ENSMUST00000158292 132 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 4930505G20Rik-201ENSMUST00000176582 561 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm29327-201ENSMUST00000188229 388 ntTSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 6430573P05Rik-201ENSMUST00000192562 508 ntTSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm18956-201ENSMUST00000192857 480 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 4930584F24Rik-203ENSMUST00000197091 954 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Igkv20-101-2-201ENSMUST00000200406 339 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm44399-201ENSMUST00000205043 226 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 AC135019.1-201ENSMUST00000219949 307 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 AC130477.2-201ENSMUST00000228158 274 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Olfr1204-201ENSMUST00000078631 930 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm23404-201ENSMUST00000082543 97 ntBASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Olfr1016-202ENSMUST00000216425 2698 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r22-202ENSMUST00000227650 3674 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Oog1-203ENSMUST00000222332 1464 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Gm15127-203ENSMUST00000112753 1950 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Mannr-201ENSMUST00000193549 1438 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Ddb1Q3U1J4 Olfr1116-202ENSMUST00000216364 9655 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r174-202ENSMUST00000228331 9058 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm9696-201ENSMUST00000094227 3050 ntTSL 2 BASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r172-201ENSMUST00000038694 9009 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r178-204ENSMUST00000226640 2282 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm22750-201ENSMUST00000102076 103 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm22831-201ENSMUST00000102473 109 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm2066-201ENSMUST00000118046 389 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm8880-201ENSMUST00000121800 454 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm23957-201ENSMUST00000157209 90 ntBASIC4.28□□□□□ -1.72
Ddb1Q3U1J4 Gm26041-201ENSMUST00000158148 108 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 76,532 protein–RNA pairs in 87.7 ms